.gitignore

# Python build artifacts
**/__pycache__/
*.pyc
*.pyo
*.egg-info/
*.egg
dist/
build/
.pytest_cache/

packages/midas_integrate/tests/benchmarks/spark_compare/
eiger_calib_local/
gui/cache/
future/
fwd_sim/
packages/*/dev
NF_HEDM/bin/*
FF_HEDM/bin/*
NF_HEDM/Cluster/*.kml
NF_HEDM/Cluster/*.swiftx
FF_HEDM/Example/pfhedm_test
FF_HEDM/Example/Au_FF*
FF_HEDM/Example/FolderNames.txt
FF_HEDM/Example/PFNames.txt
FF_HEDM/Example/RingInfo.txt
FF_HEDM/Example/run0*
FF_HEDM/Example/hkls.csv
FF_HEDM/Example/SpotMatrixGen.csv
FF_HEDM/Example/GrainsGen.csv
FF_HEDM/Example/test_Parameters.txt
FF_HEDM/Example/LayerNr_*/
FF_HEDM/Example/Calibration/*.corr.csv
FF_HEDM/Example/Calibration/hkls.csv
FF_HEDM/Example/Calibration/panelshiftsCalibrant.txt
FF_HEDM/Example/Calibration/panelshiftsCalibrant.txt.shifts.tif
FF_HEDM/Example/Calibration/panelshiftsCalibrant.txt.strain.tif
FF_HEDM/Example/Calibration/CeO2_Pil_100x100_att000_650mm_71p676keV_001956.tif.lineout.xy
FF_HEDM/Example/runinfo/
FF_HEDM/Cluster/*.kml
FF_HEDM/Cluster/*.swiftx
TOMO/bin/*
DT/bin/*
NF_HEDM/*.o
gui/*.txt
gui/*.csv
gui/*.bin
utils/__pycache__
*/__pycache__
*/*/__pycache__
.vscode
.DS_Store
build

# Build artifacts
*.o
*.so
*.dylib
*.a

# Editor / OS files
*.swp
*~
.idea/
NF_HEDM/seedOrientations/
NF_HEDM/Example/sim/
AGENT_GUIDE.md
fftwf_wisdom_*.txt

# Local IDE / tooling
.cache/
.clangd
.agent/
# `.claude/*` and not `.claude/`: git does not descend into an excluded
# DIRECTORY, so a negation under it never matches. Excluding the contents keeps
# the directory walkable and lets skills be re-included below.
.claude/*
# Shared skills ARE project assets, not machine state -- a skill that ships with
# the clone is usable by whoever checks the repo out, which is the point of the
# technique doc sets it points at. Personal settings and session state stay
# ignored by the rule above.
!.claude/skills/

# Local machine/session artifacts
.loglogin

# parsl run directories (created at runtime; not source)
**/runinfo/

# --- Internal planning / strategy / audit docs (never commit or publish) ---
packages/*/implementation_plan*.md
packages/*/AUDIT_*.md
packages/*/IMPROVEMENTS_*.md
packages/*/SIMULATION_CATALOG.md
packages/*_PLAN.md
packages/*_STRATEGY.md
packages/*_CONCEPT.md
packages/*_IDEAS.md
packages/*_SCOPE.md
packages/*_PRIOR_ART.md
packages/*_BOUNDARY.md
# Root-level planning docs + internal Pn_* project workspaces (never released)
/implementation_plan*.md
packages/P[0-9]_*/
.pytest_cache/
__pycache__/
texput.log

# Notebook run artefacts: the walkthrough writes demo data, maps and figures
# here on execution. Regenerated by re-running; 57 MB of synthetic raw frames
# has no business in git.
packages/midas_dt/notebooks/dt_output/
packages/midas_dt/notebooks/calibration_output/

# midas_dct_tt: internal working documents. The package itself is public from
# 0.1.0, but these two are thread state, not code, and publishing them would
# disclose more than the release intends:
#   * the superseded CHECKPOINT names the paper directory, the target journal
#     and the draft version, plus local paths;
#   * RELEASE_CHECKLIST's step 7 is internal deliberation -- a prior-art caution
#     naming another group and an explicit note that what looks new may not be.
# Neither is needed to build, install or use the package.
# Live AND superseded: thread state, never part of the package.
# NB gitignore has no trailing comments -- a `#` on the pattern line
# becomes part of the pattern and silently matches nothing.
packages/midas_dct_tt/CHECKPOINT.md*
packages/midas_dct_tt/RELEASE_CHECKLIST.md