Merge pull request #114 from Chaste/113-enum-support #174
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| name: test-cells-conda | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: | |
| - develop | |
| pull_request: | |
| branches: | |
| - "**" | |
| jobs: | |
| test-cells-conda: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12", "3.13"] | |
| concurrency: | |
| group: test-cells-conda-${{ github.ref }}-${{ matrix.python-version }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -el {0} # -l needed to activate conda | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v6 | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install castxml clang cmake git | |
| sudo apt-get install freeglut3-dev libglew-dev mesa-utils openbox xauth xorg | |
| - name: Setup Miniconda Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v4 | |
| with: | |
| auto-update-conda: true | |
| miniforge-version: latest | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge,defaults | |
| conda-remove-defaults: "false" | |
| - name: Install cppwg | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| python3 -m pip install -e . coverage | |
| - name: Install requirements | |
| run: | | |
| conda clean --all --yes | |
| conda config --prepend channels conda-forge | |
| conda config --set channel_priority strict | |
| conda config --get channels | |
| conda install --yes -vv --file conda/requirements.txt | |
| working-directory: examples/cells | |
| - name: Install rattler-build | |
| run: | | |
| conda install --yes -vv -c conda-forge rattler-build | |
| - name: Set config paths | |
| run: | | |
| echo "CMAKE_PREFIX_PATH=$CONDA_PREFIX;$CMAKE_PREFIX_PATH" >> $GITHUB_ENV | |
| echo "PETSC_DIR=$CONDA_PREFIX" >> $GITHUB_ENV | |
| echo "PETSC_ARCH=" >> $GITHUB_ENV | |
| echo "VTK_DIR=$CONDA_PREFIX" >> $GITHUB_ENV | |
| - name: Configure | |
| run: | | |
| mkdir build && cd build | |
| cmake .. | |
| working-directory: examples/cells | |
| - name: Enable subprocess coverage | |
| if: matrix.python-version == '3.12' | |
| run: | | |
| site=$(python3 -c 'import sysconfig; print(sysconfig.get_paths()["purelib"])') | |
| echo "import coverage; coverage.process_startup()" > "$site/cov_subprocess.pth" | |
| printf '[run]\nparallel = true\nsource = cppwg\n' > "$GITHUB_WORKSPACE/.cov_sub.rc" | |
| - name: Regenerate wrappers | |
| env: | |
| COVERAGE_PROCESS_START: ${{ github.workspace }}/.cov_sub.rc | |
| COVERAGE_FILE: ${{ github.workspace }}/.coverage | |
| run: | | |
| rm -rf dynamic/wrappers | |
| cd build | |
| make pycells_wrappers | |
| working-directory: examples/cells | |
| - name: Check for changes | |
| run: | | |
| git diff --exit-code dynamic/wrappers | |
| grep "Unknown class" build/cppwg.log | |
| working-directory: examples/cells | |
| - name: Generate coverage report | |
| if: matrix.python-version == '3.12' | |
| env: | |
| COVERAGE_FILE: ${{ github.workspace }}/.coverage | |
| run: | | |
| python3 -m coverage combine --rcfile=.cov_sub.rc | |
| python3 -m coverage xml --rcfile=.cov_sub.rc | |
| - name: Upload coverage to Codecov | |
| if: matrix.python-version == '3.12' | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ./coverage.xml | |
| flags: cells | |
| fail_ci_if_error: false | |
| - name: Build | |
| run: | | |
| rattler-build build --recipe recipe/recipe.yaml -m variants/python${{ matrix.python-version }}.yaml --output-dir ./build --channel conda-forge | |
| working-directory: examples/cells/conda | |
| - name: Install | |
| run: conda install -c ./build pycells | |
| working-directory: examples/cells/conda | |
| - name: Test | |
| run: python3 -m unittest discover tests | |
| working-directory: examples/cells |