SimpleProcessBigraphRuntime/src/simple_process_bigraph_runtime/registry/toy_library.py at c29dfc8aa3de607b085e4ce77573bc2ad0f60690 · biosimulators/SimpleProcessBigraphRuntime · GitHub

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import os.path
from typing import override, Any

from process_bigraph import Process, Step  # type: ignore[import-untyped]
from process_bigraph.composite import SyncUpdate  # type: ignore[import-untyped]

from simple_process_bigraph_runtime.environment.process_bigraph_env import ProcessBigraphEnv

complex_number = {
    "real" : "float",
    "imag" : "float",
}

TYPES_DICT = {
    "complex_number": complex_number,
}

class TypedStep(Step):
    def __init__(self, config=None, core=None):
        super().__init__(config, core)

    def inputs(self) -> dict[str, Any]:
        return {}

    def outputs(self) -> dict[str, Any]:
        return {}

    def invoke(self, state: dict[str, Any], _=None) -> SyncUpdate:
        return super().invoke(state)

    def update(self, inputs: dict[str, Any]) -> dict[str, Any]:
        raise NotImplementedError("Subclasses should implement this method.")


class TypedProcess(Process):
    def __init__(self, config=None, core=None):
        super().__init__(config, core)

    def inputs(self) -> dict[str, Any]:
        return {}

    def outputs(self) -> dict[str, Any]:
        return {}

    def invoke(self, state: dict[str, Any], interval: float) -> SyncUpdate:
        return super().invoke(state, interval)

    def update(self, inputs: dict[str, Any], interval: float) -> dict[str, Any]:
        raise NotImplementedError("Subclasses should implement this method.")


class AddFloatsStep(TypedStep):
    @override
    def inputs(self) -> dict[str, Any]:
        return {
            "left_hand_addend": "float",
            "right_hand_addend": "float"
        }

    @override
    def outputs(self) -> dict[str, Any]:
        return {
            "result": "float"
        }

    @override
    def update(self, inputs) -> dict[str, Any]:
        left_hand_addend: float = inputs["left_hand_addend"]
        right_hand_addend: float = inputs["right_hand_addend"]
        result = left_hand_addend + right_hand_addend
        return {
            "result": result
        }


class AddFloatsProcess(TypedProcess):
    @override
    def inputs(self) -> dict[str, Any]:
        return {
            "left_hand_addend": "float",
            "right_hand_addend": "float"
        }

    @override
    def outputs(self) -> dict[str, Any]:
        return {
            "result": "float"
        }

    @override
    def update(self, inputs, interval) -> dict[str, Any]:
        left_hand_addend: float = inputs["left_hand_addend"]
        right_hand_addend: float = inputs["right_hand_addend"]
        result = left_hand_addend + right_hand_addend
        return {
            "result": result
        }


class SaveFloatToFileStep(TypedStep):

    @override
    def inputs(self) -> dict[str, Any]:
        return {
            "result": "float",
        }

    @override
    def update(self, state):
        with open(os.path.expanduser(self.config["output_file_path"]), "w+") as f:
            f.write(str(state["result"]))


class AddComplexNumbersStep(TypedStep):
    @override
    def inputs(self) -> dict[str, Any]:
        return {
            "left_hand_addend": "complex_number",
            "right_hand_addend": "complex_number"
        }

    @override
    def outputs(self) -> dict[str, Any]:
        return {
            "result": "complex_number"
        }

    @override
    def update(self, inputs) -> dict[str, Any]:
        result = {}
        left_hand_addend = inputs["left_hand_addend"]
        right_hand_addend = inputs["right_hand_addend"]
        result["real"] = left_hand_addend["real"] + right_hand_addend["real"]
        result["imag"] = left_hand_addend["imag"] + right_hand_addend["imag"]
        return {
            "result": result
        }


class GetRealFromComplexNumberStep(TypedStep):
    pass


PROCESS_DICT = {
    "AddFloatsStep" : AddFloatsStep,
    "AddFloatsProcess": AddFloatsProcess,
    "SaveFloatToFileStep" : SaveFloatToFileStep,
    "AddComplexNumbersStep" : AddComplexNumbersStep,
    "GetRealFromComplexNumberStep" : GetRealFromComplexNumberStep
}


def register(assembler: ProcessBigraphEnv) -> None:
    for type_name, type_schema in TYPES_DICT.items():
        assembler.core.register("toy.type." + type_name, type_schema)
    for process_name, process in PROCESS_DICT.items():
        assembler.core.register_process("toy." + process_name, process)