CARTopiaX/params4CylindricalModel.json at master · compiler-research/CARTopiaX · GitHub

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{
  "seed": 42,
  "bound_space_toplogy": "closed",
  "num_radius_intervals": 100,
  "lateral_oxygen_production_min_z": -300.0,
  "lateral_oxygen_production_max_z": 300.0,
  "min_initial_z_substances": -300.0,
  "max_initial_z_substances": 300.0,
  "diffuse_oxygen_on_z_axis": false,
  "diffuse_glucose_on_z_axis": false,
  "output_performance_statistics": false,
  "total_minutes_to_simulate": 4320,
  "output_csv_interval": 600,
  "bounded_space_length": 6500.0,
  "tumor_shape": "cylinder",
  "output_information_dependent_on_radius": true,
  "cylindrical_tumor_radius": 3000.0,
  "max_radius_analysis_csv_dependent_on_radius": 3000.0,
  "cylindrical_tumor_height": 100.0,
  "initial_number_of_cylindrical_tumor_cells": 28000,
  "default_volume_new_tumor_cell": 1468.0,
  "std_volume_new_tumor_cell": 166,
  "min_volume_new_tumor_cell": 1136.0,
  "max_volume_new_tumor_cell": 1800.0,
  "default_volume_new_cart_cell": 269.0,
  "std_volume_new_cart_cell": 33.625,
  "min_volume_new_cart_cell": 201.75,
  "max_volume_new_cart_cell": 336.25,
  "oncoprotein_mean": 1.0,
  "oncoprotein_standard_deviation": 0.0,
  "initial_oxygen_level": 0.0,
  "oxygen_reference_level": 165.0,
  "default_oxygen_consumption_tumor_cell": 77.47,
  "default_glucose_consumption_tumor_cell": 0.045,
  "diffusion_coefficient_oxygen": 180000.0,
  "decay_constant_oxygen": 0.006666666666666667,
  "time_apoptosis": 6000.0,
  "time_lysis": 6000.0,
  "average_time_transformation_random_rate": 72,
  "standard_deviation_transformation_random_rate": 15.0,
  "decay_constant_glucose": 0.0003333333333333333,
  "oxygen_saturation_for_proliferation": 20,
  "oxygen_limit_for_proliferation": 10,
  "oxygen_limit_for_necrosis_maximum": 0.0,
  "oxygen_limit_for_necrosis": 7.1,
  "maximum_necrosis_lack_of_oxygen_rate": 7.2214e-05,
  "reduction_consumption_dead_cells": 0.0,
  "basal_death_probability_cancer_cells": 5e-06,
  "bounded_space_min_allowed_z": -50.0,
  "bounded_space_max_allowed_z": 50.0,
  "bounded_space_max_allowed_radius": 3250.0,
  "minimum_distance_from_tumor_to_spawn_cart": 0.0,
  "add_immunostimulatory_factor": true,
  "add_glucose": true,
  "diffusion_coefficient_glucose": 7800,
  "initial_glucose_level": 24.98,
  "treatment": {
    "0": 560000
  },
  "default_oxygen_consumption_cart": 16,
  "default_glucose_consumption_cart": 0.007,
  "adhesion_rate_cart": 8.5e-06,
  "glucose_saturation_for_tumor_cell_growth": 24.98,
  "glucose_limit_for_tumor_cell_growth": 0,
  "glucose_limit_for_death": 5,
  "glucose_limit_for_death_maximum": 0,
  "maximum_death_lack_of_glucose_rate": 0.000175,
  "minimum_tumor_cell_target_volume_fraction_for_division": 0.9,
  "avg_migration_bias_cart": 0,
  "std_migration_bias_cart": 0.135,
  "persistence_time_cart": 0,
  "diffusion_coefficient_immunostimulatory_factor": 100000,
  "decay_constant_immunostimulatory_factor": 1e-05
}