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Copy file name to clipboardExpand all lines: METHODOLOGY_REVIEW.md
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@@ -856,10 +856,10 @@ These three are feature deferrals (paper-supported extensions that the library h
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**Deviations from the paper / from R / library extensions:**
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1.**Equal-weighting on the continuous path** (paper does not prescribe a unit-weighting scheme; library uses per-unit `w_g = 1` matching `_nprobust_port.lprobust`'s default, NOT cell-size weights). Locked in `tests/test_methodology_had.py::TestHADDeviations::test_equal_weighting_is_per_row_not_per_dose_cell` (probes the deviation via selective low-dose-region replication on a nonlinear DGP: per-row equal weighting predicts the att shifts; cell-size weighting predicts invariance).
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2.**Sup-t bootstrap gating** — runs only when `aggregate="event_study"` AND `(weights= or survey_design= supplied)` AND `cband=True`. Unweighted event-study bit-exactly preserves pre-Phase 4.5 B output. Locked in `TestHADDeviations::test_sup_t_bootstrap_skipped_*`.
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2.**Sup-t bootstrap gating** — runs only in the event-study mode (multi-period panels; the deprecated `aggregate=` override maps to it, M-027) AND `(weights= or survey_design= supplied)` AND `cband=True`. Unweighted event-study bit-exactly preserves pre-Phase 4.5 B output. Locked in `TestHADDeviations::test_sup_t_bootstrap_skipped_*`.
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3.**Pierce-Schott Figure 2 replication waived** — R parity at `atol=1e-8` is a stronger anchor; paper Section 5.2 self-acknowledges NP estimators are too noisy on LBD-restricted PNTR data. See REGISTRY Deviations § "Pierce-Schott (2016) Figure 2 replication harness deferred" for the full scope-caveat statement.
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4.**Table 1 coverage-rate reproduction waived** — same R-parity-is-stronger rationale; R parity locks point estimate + SE + CI bounds bit-exactly, coverage-rate MC would re-verify the CCF asymptotic coverage already pinned. Paper Table 1 (89% / 93% / 95% under-coverage at G=100 / 500 / 2500) documents the asymptotic gap that BOTH R and Python inherit.
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5.**Staggered-timing fail-closed `ValueError`** at `diff_diff/had.py:1511` (paper prescribes "Warn"; library raises). Library extension toward stricter safety — `UserWarning` would let the silent-misuse bug class through. Locked in `TestHADDeviations::test_staggered_timing_fail_closed_value_error`.
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5.**Staggered-timing fail-closed `ValueError`** at `diff_diff/had.py:1624` (paper prescribes "Warn"; library raises). Library extension toward stricter safety — `UserWarning` would let the silent-misuse bug class through. Locked in `TestHADDeviations::test_staggered_timing_fail_closed_value_error`.
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6.**Eq. 18 linear-trend-detrended joint Stute SHIPPED** (PR #389) and R-parity-locked against `DIDHAD::did_had(..., trends_lin=TRUE)` v2.0.0 in `tests/test_did_had_parity.py` (3 DGPs × 5 method combos at `atol=1e-8`). The `tests/test_methodology_had.py::TestHADJointStute` walkthrough deliberately covers only the un-detrended mean-independence and linearity variants (no coverage duplication with the R-parity surface). The Pierce-Schott (2016) NUMERICAL replication against the published p=0.51 anchor on the LBD-restricted PNTR panel is what's waived (Deviations Note #3).
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**Outstanding Concerns:**
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-**Survey + non-HC1 vcov** — HC2 / HC2-BM / classical **explicitly raise `NotImplementedError`** under `survey_design=` (a fail-closed guard: the survey TSL / replicate-refit variance would otherwise silently discard the requested sandwich family): `stacked_did.py:428`, `sun_abraham.py:751`, `wooldridge.py:702`, `twfe.py:252`.
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-**Survey + user `cluster=`** — **explicitly raises** (a fail-closed guard, not a silent drop): the survey TSL / replicate-refit variance would otherwise ignore `cluster=`, so the combination is rejected at construction: `efficient_did.py:518`, `staggered.py:1719`, `imputation.py:314`, `two_stage.py:1439`, `triple_diff.py:674`.
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-**SyntheticControl** — no survey support yet (`synthetic_control.py:335`).
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-**HAD-specific** — `trends_lin=True` + survey (`had.py:3067`); QUG pretest + survey (extreme-order statistic not smooth in the empirical CDF, `had_pretests.py:1455`); `lonely_psu='adjust'` + singleton strata on the sup-t / Stute bootstrap.
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-**HAD-specific** — `trends_lin=True` + survey (`had.py:3192`); QUG pretest + survey (extreme-order statistic not smooth in the empirical CDF, `had_pretests.py:1455`); `lonely_psu='adjust'` + singleton strata on the sup-t / Stute bootstrap.
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-**HonestDiD M>0 smoothness** survey FLCI uses asymptotic normal only (`df_survey=0`→NaN); tracked in the HonestDiD section.
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