[develop] Update ufs-weather-model hash to end of March (ufs-community#1369)

* Externals.cfg - Update ufs-weather-model hash to 855243a (March 25)
* doc/UsersGuide/CustomizingTheWorkflow/InputOutputFiles.rst - Update path to UPP's output-files and control-file documentation anchors
* doc/UsersGuide/Reference/Glossary.rst - Update path to the new FVCOM website
* Following the decommissioning of Jet on March 31, 2026, remove references to Jet

Author: MichaelLueken

Externals.cfg

@@ -12,7 +12,7 @@ protocol = git
 repo_url = https://github.com/ufs-community/ufs-weather-model
 # Specify either a branch name or a hash but not both.
 #branch = develop
-hash = 36d5e2a
+hash = 855243a
 local_path = sorc/ufs-weather-model
 required = True
 

devbuild.sh

@@ -10,7 +10,7 @@ OPTIONS
       show this help guide
   -p, --platform=PLATFORM
       name of machine you are building on
-      (e.g. derecho | hera | jet | orion | ursa | wcoss2)
+      (e.g. derecho | hera | orion | ursa | wcoss2)
   -c, --compiler=COMPILER
       compiler to use; default depends on platform
       (e.g. intel | gnu | cray | gccgfortran)
@@ -342,7 +342,7 @@ set -eu
 # automatically determine compiler
 if [ -z "${COMPILER}" ] ; then
   case ${PLATFORM} in
-    jet|hera|gaea|gaea-c6|ursa) COMPILER=intel ;;
+    hera|gaeac6|ursa) COMPILER=intel ;;
     orion|hercules) COMPILER=intel ;;
     wcoss2) COMPILER=intel ;;
     derecho) COMPILER=intel ;;

doc/ContribGuide/contributing.rst

@@ -228,14 +228,11 @@ Here is the template that is provided when developers click "Create pull request
    <!-- Add an X to check off a box. -->
 
    - [ ] derecho.intel
-   - [ ] gaea.intel
-   - [ ] gaea-c6.intel
-   - [ ] hera.gnu
-   - [ ] hera.intel
+   - [ ] gaeac6.intel
    - [ ] hercules.intel
-   - [ ] jet.intel
    - [ ] orion.intel
-   - [ ] wcoss2.intel
+   - [ ] ursa.gnu
+   - [ ] ursa.intel  
    - [ ] NOAA Cloud (indicate which platform)
    - [ ] Jenkins
    - [ ] fundamental test suite
@@ -278,7 +275,6 @@ Here is the template that is provided when developers click "Create pull request
    - [ ] run_we2e_fundamental_tests
    - [ ] run_we2e_comprehensive_tests
    - [ ] Needs Cheyenne test 
-   - [ ] Needs Jet test 
    - [ ] Needs Hera test 
    - [ ] Needs Orion test 
    - [ ] help wanted

doc/ContribGuide/testing.rst

@@ -47,19 +47,17 @@ Additionally, users can potentially access the directories where the Jenkins tes
    * - Tier-1 Platform
      - Location of Jenkins experiment directories
    * - Derecho
-     - /glade/derecho/scratch/epicufsrt/jenkins/workspace
-   * - Gaea
-     - /gpfs/f5/epic/scratch/role.epic/jenkins/workspace/fs-srweather-app_pipeline_PR-#/gaea
-   * - Hera (Intel)
-     - /scratch2/NAGAPE/epic/role.epic/jenkins/workspace/fs-srweather-app_pipeline_PR-#__2/hera
-   * - Hera (GNU)
-     - /scratch2/NAGAPE/epic/role.epic/jenkins/workspace/fs-srweather-app_pipeline_PR-#/hera
+     - /glade/derecho/scratch/epicufsrt/jenkins/workspace/s-srweather-app_pipeline_PR-#/derecho
+   * - Gaea C6
+     - /gpfs/f6/epic/scratch/role.epic/jenkins/workspace/s-srweather-app_pipeline_PR-#/gaeac6
    * - Hercules
-     - /work/noaa/epic/role-epic/jenkins/workspace/fs-srweather-app_pipeline_PR-#/hercules
-   * - Jet
-     - /lfs1/NAGAPE/epic/role.epic/jenkins/workspace/fs-srweather-app_pipeline_PR-#/jet
+     - /work2/noaa/epic/role-epic/jenkins/workspace/s-srweather-app_pipeline_PR-#/hercules
    * - Orion
-     - /work/noaa/epic/role-epic/jenkins/workspace/fs-srweather-app_pipeline_PR-#/orion
+     - /work/noaa/epic/role-epic/jenkins/workspace/s-srweather-app_pipeline_PR-#/orion
+   * - Ursa (GNU)
+     - /scratch3/NAGAPE/epic/role-epic/jenkins/workspace/s-srweather-app_pipeline_PR-#/ursa
+   * - Ursa (Intel)
+     - /scratch3/NAGAPE/epic/role-epic/jenkins/workspace/s-srweather-app_pipeline_PR-#_2/ursa
 
 where ``#`` is the PR number.
 

doc/UsersGuide/CustomizingTheWorkflow/ConfigWorkflow.rst

@@ -123,7 +123,7 @@ Machine-Dependent Parameters
 These parameters vary depending on machine. On :srw-wiki:`Level 1 and 2 <Supported-Platforms-and-Compilers>` systems, the appropriate values for each machine can be viewed in the ``ush/machine/<platform>.sh`` scripts. To specify a value other than the default, add these variables and the desired value in the ``config.yaml`` file so that they override the ``config_defaults.yaml`` and machine default values. 
 
 ``PARTITION_DEFAULT``: (Default: "")
-   This variable is only used with the Slurm job scheduler (i.e., when ``SCHED: "slurm"``). This is the default partition to which Slurm submits workflow tasks. If the task's ``PARTITION_HPSS`` or ``PARTITION_FCST`` (see below) parameters are **not** specified, the task will be submitted to the default partition indicated in the ``PARTITION_DEFAULT`` variable. If this value is not set or is set to an empty string, it will be (re)set to a machine-dependent value. Options are machine-dependent and include: ``""`` | ``"hera"`` | ``"normal"`` | ``"orion"`` | ``"sjet"`` | ``"vjet"`` | ``"kjet"`` | ``"xjet"`` | ``"workq"``
+   This variable is only used with the Slurm job scheduler (i.e., when ``SCHED: "slurm"``). This is the default partition to which Slurm submits workflow tasks. If the task's ``PARTITION_HPSS`` or ``PARTITION_FCST`` (see below) parameters are **not** specified, the task will be submitted to the default partition indicated in the ``PARTITION_DEFAULT`` variable. If this value is not set or is set to an empty string, it will be (re)set to a machine-dependent value. Options are machine-dependent and include: ``""`` | ``"hera"`` | ``"normal"`` | ``"orion"`` | ``"workq"``
 
 ``QUEUE_DEFAULT``: (Default: "")
    The default queue or QOS to which workflow tasks are submitted (QOS is Slurm's term for queue; it stands for "Quality of Service"). If the task's ``QUEUE_HPSS`` or ``QUEUE_FCST`` parameters (see below) are not specified, the task will be submitted to the queue indicated by this variable. If this value is not set or is set to an empty string, it will be (re)set to a machine-dependent value. Options are machine-dependent and include: ``""`` | ``"batch"`` | ``"dev"`` | ``"normal"`` | ``"regular"`` | ``"workq"``
@@ -135,7 +135,7 @@ These parameters vary depending on machine. On :srw-wiki:`Level 1 and 2 <Support
    Tasks that get or create links to external model files are submitted to this queue, or QOS (QOS is Slurm's term for queue; it stands for "Quality of Service"). These links are needed to generate initial conditions (:term:`ICs`) and lateral boundary conditions (:term:`LBCs`) for the experiment. If this value is not set or is set to an empty string, it will be (re)set to a machine-dependent value. Options are machine-dependent and include: ``""`` | ``"batch"`` | ``"dev_transfer"`` | ``"normal"`` | ``"regular"`` | ``"workq"``
 
 ``PARTITION_FCST``: (Default: "")
-   This variable is only used with the Slurm job scheduler (i.e., when ``SCHED: "slurm"``). The task that runs forecasts is submitted to this partition. If this variable is not set or is set to an empty string, it will be (re)set to a machine-dependent value. Options are machine-dependent and include: ``""`` | ``"hera"`` | ``"normal"`` | ``"orion"`` | ``"sjet"`` | ``"vjet"`` | ``"kjet"`` | ``"xjet"`` | ``"workq"``
+   This variable is only used with the Slurm job scheduler (i.e., when ``SCHED: "slurm"``). The task that runs forecasts is submitted to this partition. If this variable is not set or is set to an empty string, it will be (re)set to a machine-dependent value. Options are machine-dependent and include: ``""`` | ``"hera"`` | ``"normal"`` | ``"orion"`` | ``"workq"``
 
 ``QUEUE_FCST``: (Default: "")
    The task that runs a forecast is submitted to this queue, or QOS (QOS is Slurm's term for queue; it stands for "Quality of Service"). If this variable is not set or set to an empty string, it will be (re)set to a machine-dependent value. Options are machine-dependent and include: ``""`` | ``"batch"`` | ``"dev"`` | ``"normal"`` | ``"regular"`` | ``"workq"``
@@ -919,7 +919,7 @@ File and Directory Parameters
 --------------------------------
 
 ``EXTRN_MDL_SYSBASEDIR_LBCS``: (Default: '')
-   Same as ``EXTRN_MDL_SYSBASEDIR_ICS`` but for :term:`LBCs`. A known location of a real data stream on a given platform. This is typically a real-time data stream as on Hera, Jet, or WCOSS. External model files for generating :term:`LBCs` on the native grid should be accessible via this data stream. The way the full path containing these files is constructed depends on the user-specified external model for LBCs (defined above in :numref:`Section %s <basic-get-extrn-lbcs>` ``EXTRN_MDL_NAME_LBCS`` above).
+   Same as ``EXTRN_MDL_SYSBASEDIR_ICS`` but for :term:`LBCs`. A known location of a real data stream on a given platform. This is typically a real-time data stream as on Hera or WCOSS. External model files for generating :term:`LBCs` on the native grid should be accessible via this data stream. The way the full path containing these files is constructed depends on the user-specified external model for LBCs (defined above in :numref:`Section %s <basic-get-extrn-lbcs>` ``EXTRN_MDL_NAME_LBCS`` above).
 
    .. note::
       This variable must be defined as a null string in ``config_defaults.yaml`` so that if it is specified by the user in the experiment configuration file (``config.yaml``), it remains set to those values, and if not, it gets set to machine-dependent values.

doc/UsersGuide/CustomizingTheWorkflow/InputOutputFiles.rst

@@ -147,7 +147,7 @@ where ``HHH`` corresponds to the 3-digit forecast hour (e.g., ``dynf006.nc`` for
 
 Unified Post Processor (UPP)
 ----------------------------
-Documentation for the UPP output files can be found in the `UPP User's Guide <https://upp.readthedocs.io/en/latest/InputsOutputs.html#output-files>`__.
+Documentation for the UPP output files can be found in the `UPP User's Guide <https://upp.readthedocs.io/en/latest/BuildingRunningTesting/InputsOutputs.html#output-files>`__.
 
 .. COMMENT: Add crosslink in UPP docs; add ref here. 
 
@@ -172,7 +172,7 @@ UPP Product Output Tables for the UFS SRW LAM Grid:
    * :doc:`3D Native Hybrid Level Fields <../../tables/SRW_NATLEV_table>`
    * :doc:`3D Pressure Level Fields <../../tables/SRW_PRSLEV_table>`
 
-Use the instructions in the `UPP User's Guide <https://upp.readthedocs.io/en/latest/InputsOutputs.html#control-file>`__ to make modifications to the ``fv3lam.xml`` file and to remake the flat text file, called ``postxconfig-NT-fv3lam.txt`` (default), that the UPP reads.
+Use the instructions in the `UPP User's Guide <https://upp.readthedocs.io/en/latest/BuildingRunningTesting/InputsOutputs.html#control-file>`__ to make modifications to the ``fv3lam.xml`` file and to remake the flat text file, called ``postxconfig-NT-fv3lam.txt`` (default), that the UPP reads.
 
 .. COMMENT: Add crosslink to UPP docs; then update here. 
 

doc/UsersGuide/Reference/Glossary.rst

@@ -118,7 +118,7 @@ Glossary
       Fire Radiative Power (FRP) is a measure of the rate of radiant heat output from a fire, typically derived from satellite observations. FRP observations from :term:`RAVE` data are used in the SRW App's smoke and dust module to estimate fire emissions and initialize smoke tracer fields in the atmospheric model.
 
    FVCOM
-      `Finite Volume Community Ocean Model <http://www.fvcom.org/>`_. FVCOM is used in modeling work for the `Great Lakes Coastal Forecasting System (next-gen FVCOM) <https://www.glerl.noaa.gov/res/glcfs/>`_ conducted by the `Great Lakes Environmental Research Laboratory <https://www.glerl.noaa.gov/>`_.
+      `Finite Volume Community Ocean Model <https://fvcom.smast.umassd.edu/>`_. FVCOM is used in modeling work for the `Great Lakes Coastal Forecasting System (next-gen FVCOM) <https://www.glerl.noaa.gov/res/glcfs/>`_ conducted by the `Great Lakes Environmental Research Laboratory <https://www.glerl.noaa.gov/>`_.
 
    GFS
       `Global Forecast System <https://www.ncei.noaa.gov/products/weather-climate-models/global-forecast>`_. The GFS is a National Centers for Environmental Prediction (:term:`NCEP`) weather forecast model that generates data for dozens of atmospheric and land-soil variables, including temperatures, winds, precipitation, soil moisture, and atmospheric ozone concentration. The system couples four separate models (atmosphere, ocean, land/soil, and sea ice) that work together to accurately depict weather conditions.

doc/tables/Tests.csv

@@ -52,19 +52,19 @@ yes,yes,grid_RRFS_CONUS_25km_ics_NAM_lbcs_NAM_suite_GFS_v16,RRFS_CONUS_25km,FV3_
 ,yes,pregen_grid_orog_sfc_climo,RRFS_CONUS_25km,FV3_GFS_v15p2,FV3GFS,FV3GFS,2019070100,6,6,17,
 ,yes,specify_EXTRN_MDL_SYSBASEDIR_ICS_LBCS,RRFS_CONUS_25km,FV3_GFS_v15p2,FV3GFS,FV3GFS,2021061500,6,6,19,
 ,yes,specify_template_filenames,RRFS_CONUS_25km,FV3_GFS_v15p2,FV3GFS,FV3GFS,2019070100,6,6,28,
-,hera/jet/orion/gaea/gaea-c6,get_from_AWS_ics_GEFS_lbcs_GEFS_fmt_grib2_2022040400_ensemble_2mems,RRFS_CONUS_3km,FV3_HRRR,GEFS,GEFS,2022040400,6,805,45,
-,hera/jet/orion/gaea/gaea-c6,get_from_NOMADS_ics_FV3GFS_lbcs_FV3GFS,RRFS_CONUS_25km,FV3_GFS_v15p2,FV3GFS,FV3GFS,*2 days ago*,6,12,40,Retrieves online data and runs a forecast valid 00z 2 days previous to the test date
-,hera/jet,custom_ESGgrid_Great_Lakes_snow_8km,*custom*,FV3_RAP,RAP,RAP,2023021700,6,,,
-,hera/jet,get_from_HPSS_ics_FV3GFS_lbcs_FV3GFS_fmt_grib2_2019061200,RRFS_CONUS_25km,FV3_GFS_v15p2,FV3GFS,FV3GFS,2019061200,6,6,19,
-,hera/jet,get_from_HPSS_ics_FV3GFS_lbcs_FV3GFS_fmt_nemsio_2019061200,RRFS_CONUS_25km,FV3_GFS_v15p2,FV3GFS,FV3GFS,2019061200,6,10,23,
-,hera/jet,get_from_HPSS_ics_FV3GFS_lbcs_FV3GFS_fmt_nemsio_2021032018,RRFS_CONUS_25km,FV3_GFS_v15p2,FV3GFS,FV3GFS,2021032018,6,10,23,
-,hera/jet,get_from_HPSS_ics_FV3GFS_lbcs_FV3GFS_fmt_netcdf_2022060112_48h,RRFS_CONUS_25km,FV3_GFS_v16,FV3GFS,FV3GFS,2022060112,48,55,43,
-,hera/jet,get_from_HPSS_ics_GDAS_lbcs_GDAS_fmt_netcdf_2022040400_ensemble_2mems,RRFS_CONUS_3km,FV3_HRRR,GDAS,GDAS,2022040400,6,765,48,
-,hera/jet,get_from_HPSS_ics_GSMGFS_lbcs_GSMGFS,RRFS_CONUS_25km,FV3_GFS_v15p2,GSMGFS,GSMGFS,2019052000,6,10,25,
-,hera/jet,get_from_HPSS_ics_HRRR_lbcs_RAP,RRFS_CONUScompact_25km,FV3_HRRR,HRRR,RAP,2020080100,6,14,30,
-,hera/jet,get_from_HPSS_ics_RAP_lbcs_RAP,RRFS_CONUS_25km,FV3_HRRR,RAP,RAP,2019052000,6,17,35,
-,hera/jet,long_fcst,RRFS_CONUScompact_25km,FV3_RAP,FV3GFS,FV3GFS,2023060112,108,50,,
-,hera/jet,MET_ensemble_verification_only_vx_time_lag,RRFS_CONUS_3km,*none*,*none*,*none*,2021050500,6,3,30,
+,ursa/orion/gaeac6,get_from_AWS_ics_GEFS_lbcs_GEFS_fmt_grib2_2022040400_ensemble_2mems,RRFS_CONUS_3km,FV3_HRRR,GEFS,GEFS,2022040400,6,805,45,
+,ursa/orion/gaeac6,get_from_NOMADS_ics_FV3GFS_lbcs_FV3GFS,RRFS_CONUS_25km,FV3_GFS_v15p2,FV3GFS,FV3GFS,*2 days ago*,6,12,40,Retrieves online data and runs a forecast valid 00z 2 days previous to the test date
+,ursa,custom_ESGgrid_Great_Lakes_snow_8km,*custom*,FV3_RAP,RAP,RAP,2023021700,6,,,
+,ursa,get_from_HPSS_ics_FV3GFS_lbcs_FV3GFS_fmt_grib2_2019061200,RRFS_CONUS_25km,FV3_GFS_v15p2,FV3GFS,FV3GFS,2019061200,6,6,19,
+,ursa,get_from_HPSS_ics_FV3GFS_lbcs_FV3GFS_fmt_nemsio_2019061200,RRFS_CONUS_25km,FV3_GFS_v15p2,FV3GFS,FV3GFS,2019061200,6,10,23,
+,ursa,get_from_HPSS_ics_FV3GFS_lbcs_FV3GFS_fmt_nemsio_2021032018,RRFS_CONUS_25km,FV3_GFS_v15p2,FV3GFS,FV3GFS,2021032018,6,10,23,
+,ursa,get_from_HPSS_ics_FV3GFS_lbcs_FV3GFS_fmt_netcdf_2022060112_48h,RRFS_CONUS_25km,FV3_GFS_v16,FV3GFS,FV3GFS,2022060112,48,55,43,
+,ursa,get_from_HPSS_ics_GDAS_lbcs_GDAS_fmt_netcdf_2022040400_ensemble_2mems,RRFS_CONUS_3km,FV3_HRRR,GDAS,GDAS,2022040400,6,765,48,
+,ursa,get_from_HPSS_ics_GSMGFS_lbcs_GSMGFS,RRFS_CONUS_25km,FV3_GFS_v15p2,GSMGFS,GSMGFS,2019052000,6,10,25,
+,ursa,get_from_HPSS_ics_HRRR_lbcs_RAP,RRFS_CONUScompact_25km,FV3_HRRR,HRRR,RAP,2020080100,6,14,30,
+,ursa,get_from_HPSS_ics_RAP_lbcs_RAP,RRFS_CONUS_25km,FV3_HRRR,RAP,RAP,2019052000,6,17,35,
+,ursa,long_fcst,RRFS_CONUScompact_25km,FV3_RAP,FV3GFS,FV3GFS,2023060112,108,50,,
+,ursa,MET_ensemble_verification_only_vx_time_lag,RRFS_CONUS_3km,*none*,*none*,*none*,2021050500,6,3,30,
 ,,aqm_grid_AQM_NA13km_suite_GFS_v16,AQM_NA_13km,FV3_GFS_v16,FV3GFS,FV3GFS,2023021700 2023021706,6,,,This is an air-quality model test that requires special compilation to run; not supported in this release
 ,,grid_RRFS_NA_3km_ics_FV3GFS_lbcs_FV3GFS_suite_RRFS_v1beta,RRFS_NA_3km,FV3_RRFS_v1beta,FV3GFS,FV3GFS,2019070100,3,,,The RRFS_NA_3km domain currently has segfault problems--this test is not run
 ,,subhourly_post,RRFS_CONUScompact_25km,FV3_RRFS_v1beta,HRRR,RAP,2020081000,3,,,Subhourly post tasks are currently broken--these tests are not run

doc/tables/code-managers.csv

@@ -18,4 +18,4 @@ EPIC;Mark Potts (@mark-a-potts);HPC systems
 EPIC;Edward Snyder (@EdwardSnyder-NOAA);WE2E testing, input data
 GLERL;David Wright (@dmwright526);FVCOM integration, output visualization, preprocessing tasks
 EPIC;Ratko Vasic (@RatkoVasic-NOAA);Workflow, testing, and spack-stack maintenance
-NSSL;Yunheng Wang (@ywangwof);HPC systems, code management, and regional workflow (especially on Stampede, Jet and NSSL computers)
+NSSL;Yunheng Wang (@ywangwof);HPC systems, code management, and regional workflow (especially on Stampede and NSSL computers)