Repositories list

• MemoryViews.jl

  Public
  Simple, low-level views into memory in Julia

  Julia

  •

  MIT License

  •22 forks•2424 stars•11 issue•33 pull requests•Updated Sep 3, 2026Sep 3, 2026

• Kmers.jl

  Public
  Efficient types and methods for K-mer biosequences

  Julia

  •

  MIT License

  •88 forks•3131 stars•33 issues•22 pull requests•Updated Sep 3, 2026Sep 3, 2026

• BioStructures.jl

  Public
  A Julia package to read, write and manipulate macromolecular structures

  bioinformaticsbiologystructural-biology+ 5

  bioinformaticsbiologystructural-biologypdbjuliaprotein-structurestructural-bioinformaticsbiojulia

  Julia

  •

  Other

  •2727 forks•106106 stars•99 issues•22 pull requests•Updated Sep 2, 2026Sep 2, 2026

• BioSequences.jl

  Public
  Biological sequences for the julia language

  bioinformaticsbiologybiological-sequences+ 1

  bioinformaticsbiologybiological-sequencesbiojulia

  Julia

  •

  MIT License

  •5151 forks•161161 stars•2222 issues•77 pull requests•Updated Aug 30, 2026Aug 30, 2026

• FASTX.jl

  Public
  Parse and process FASTA and FASTQ formatted files of biological sequences.

  parsingjuliabio+ 8

  parsingjuliabiofile-formatfastafastq-formatfastqfastq-filesfasta-formatbiojulia+ 1

  Julia

  •

  MIT License

  •2121 forks•6666 stars•55 issues•11 pull request•Updated Aug 30, 2026Aug 30, 2026

• LibDeflate.jl

  Public
  Julia bindings for libdeflate

  Julia

  •

  MIT License

  •22 forks•1313 stars•11 issue•00 pull requests•Updated Aug 27, 2026Aug 27, 2026

• ProteinSecondaryStructures.jl

  Public
  Wrapper to protein secondary structure calculation packages

  Julia

  •

  MIT License

  •11 fork•1313 stars•00 issues•00 pull requests•Updated Aug 25, 2026Aug 25, 2026

• SingleCellProjections.jl

  Public
  Analysis of Single Cell Expression data in Julia

  Julia

  •

  Other

  •44 forks•2525 stars•33 issues•00 pull requests•Updated Aug 24, 2026Aug 24, 2026

• BufferIO.jl

  Public
  The buffer is the interface

  Julia

  •

  MIT License

  •11 fork•2323 stars•66 issues•11 pull request•Updated Aug 23, 2026Aug 23, 2026

• BioJuliaTemplate.jl

  Public template
  Template package for BioJulia

  Julia

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Aug 19, 2026Aug 19, 2026

• biojulia.github.io

  Public
  Julia

  •

  MIT License

  •66 forks•66 stars•22 issues•00 pull requests•Updated Aug 18, 2026Aug 18, 2026

• BioTutorials

  Public
  Tutorial Notebooks of BioJulia

  julia

  julia

  CSS

  •88 forks•3636 stars•99 issues•11 pull request•Updated Aug 18, 2026Aug 18, 2026

• NCBIBlast.jl

  Public
  Thin wrapper around NCBI's BLAST+ CLI https://www.ncbi.nlm.nih.gov/books/NBK569856/

  Julia

  •

  MIT License

  •22 forks•66 stars•11 issue•00 pull requests•Updated Jul 28, 2026Jul 28, 2026

• GFF3.jl

  Public
  bioinformaticsgff3gff3-files+ 1

  bioinformaticsgff3gff3-filesgff3-format

  Julia

  •

  MIT License

  •66 forks•1313 stars•44 issues•11 pull request•Updated Jul 28, 2026Jul 28, 2026

• XAM.jl

  Public
  Parse and process SAM and BAM formatted files

  bam-filesbioinformaticssam+ 5

  bam-filesbioinformaticssambambiojuliasam-filessam-formatbam-format

  Julia

  •

  MIT License

  •1515 forks•2929 stars•2323 issues•66 pull requests•Updated Jul 27, 2026Jul 27, 2026

• Indexes.jl

  Public
  tabix

  tabix

  Julia

  •

  MIT License

  •55 forks•44 stars•22 issues•44 pull requests•Updated Jul 20, 2026Jul 20, 2026

• PopGenCore.jl

  Public
  Core utilities for PopGen.jl, including the PopData type and file IO

  Julia

  •

  MIT License

  •33 forks•66 stars•33 issues•00 pull requests•Updated Jul 14, 2026Jul 14, 2026

• PopGen.jl

  Public
  Population Genetics in Julia

  snpsgenomicsgenetics+ 4

  snpsgenomicsgeneticsstructurepopgenfstmicrosatellites

  Julia

  •

  MIT License

  •1818 forks•5353 stars•44 issues•00 pull requests•Updated Jul 14, 2026Jul 14, 2026

• BGZFLib.jl

  Public
  Read and write BGZF files

  Julia

  •

  MIT License

  •00 forks•55 stars•00 issues•00 pull requests•Updated Jul 10, 2026Jul 10, 2026

• Automa.jl

  Public
  A julia code generator for regular expressions

  juliaregular-expression

  juliaregular-expression

  Julia

  •

  Other

  •1717 forks•198198 stars•99 issues•11 pull request•Updated Jun 14, 2026Jun 14, 2026

• GenomicAnnotations.jl

  Public
  bioinformaticsgff3biology+ 4

  bioinformaticsgff3biologyjuliagenbankgenesgenome-annotation

  Julia

  •

  MIT License

  •66 forks•1818 stars•11 issue•00 pull requests•Updated Jun 3, 2026Jun 3, 2026

• BioAlignments.jl

  Public
  Sequence alignment tools

  bam-filesbioinformaticsbiology+ 7

  bam-filesbioinformaticsbiologyhigh-throughput-sequencingdna-sequencessequence-alignmentsequence-analysisbiojuliasmith-waterman-alignmentsam-files

  Julia

  •

  MIT License

  •2626 forks•6565 stars•2222 issues•22 pull requests•Updated Mar 18, 2026Mar 18, 2026

• CIGARStrings.jl

  Public
  Read and write Concise Idiosyncratic Gapped Alignment Reports.

  Julia

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 20, 2026Feb 20, 2026

• XAMAuxData.jl

  Public
  Read auxiliary data fields in SAM, GFA and PAF formats

  Julia

  •

  MIT License

  •11 fork•33 stars•00 issues•22 pull requests•Updated Feb 20, 2026Feb 20, 2026

• PairwiseMappingFormat.jl

  Public
  Parser for the PAF format in bioinformatics

  Julia

  •

  MIT License

  •11 fork•33 stars•00 issues•11 pull request•Updated Feb 20, 2026Feb 20, 2026

• posts

  Public
  Blog posts for the biojulia website

  bioinformaticsbiologyjulia

  bioinformaticsbiologyjulia

  Julia

  •55 forks•77 stars•66 issues•11 pull request•Updated Jan 15, 2026Jan 15, 2026

• BED.jl

  Public
  bioinformaticsbed-format

  bioinformaticsbed-format

  Julia

  •

  MIT License

  •77 forks•66 stars•33 issues•33 pull requests•Updated Dec 28, 2025Dec 28, 2025

• BioMakie.jl

  Public
  Plotting and interface tools for biology.

  Julia

  •

  MIT License

  •77 forks•7171 stars•44 issues•1414 pull requests•Updated Dec 11, 2025Dec 11, 2025

• FormatSpecimens.jl

  Public
  Biological file format specimens for testing packages, and functions to assist in testing.

  Julia

  •

  Other

  •33 forks•1616 stars•00 issues•00 pull requests•Updated Nov 18, 2025Nov 18, 2025

• KWayMerges.jl

  Public
  Implementation of k-way merge algorithms in Julia

  Julia

  •

  MIT License

  •00 forks•44 stars•11 issue•11 pull request•Updated Jul 11, 2025Jul 11, 2025