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@mrc-ide MRC Centre for Global Infectious Disease Analysis

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    596 repositories

    • helios

      Public
      Simulating far UVC for pathogen control
      R
      •
      Other
      •3•8•24•3•Updated Sep 4, 2026Sep 4, 2026

    • paramap-api

      Public
      R
      •0•0•0•2•Updated Sep 3, 2026Sep 3, 2026

    • MMSpower

      Public
      MMS power package
      R
      •
      Other
      •0•0•0•2•Updated Sep 3, 2026Sep 3, 2026

    • chronofix

      Public
      R
      •
      Other
      •0•1•1•1•Updated Sep 2, 2026Sep 2, 2026

    • chronofix-analysis

      Public
      R
      •
      MIT License
      •0•1•0•0•Updated Sep 1, 2026Sep 1, 2026

    • flodia

      Public
      🌊🌊 Compartmental model flow diagrams in base R
      R
      •
      Other
      •1•4•0•0•Updated Sep 1, 2026Sep 1, 2026

    • PhyDyn

      Public
      PhyDyn: Epidemiological modelling in BEAST
      Java
      •
      GNU General Public License v3.0
      •8•21•8•1•Updated Aug 31, 2026Aug 31, 2026

    • mpox-clade1-vax-analysis

      Public
      Repository accompanying the paper: "Epidemiological characteristics and vaccination impact scenario modelling of concurrent Clade I mpox outbreaks in the Democr…
      R
      •
      Other
      •0•0•0•0•Updated Aug 29, 2026Aug 29, 2026

    • wastewatchR

      Public
      Branching-process based framework to evaluate the utility of wastewater-based surveillance for emerging pathogens.
      R
      •1•2•1•0•Updated Aug 28, 2026Aug 28, 2026

    • hipercow-py

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 28, 2026Aug 28, 2026

    • mint-v2

      Public
      Malaria intervention tool V2
      TypeScript
      •0•0•0•0•Updated Aug 26, 2026Aug 26, 2026

    • estiMINT-python

      Public
      Python
      •0•0•0•0•Updated Aug 26, 2026Aug 26, 2026

    • anatembea

      Public
      AnteNatal Assessment of Temporal malaria Epidemiology using Mechanistic models, Bayesian Estimation, and Analysis
      R
      •
      Other
      •3•1•5•0•Updated Aug 26, 2026Aug 26, 2026

    • EpiEstim

      Public
      A tool to estimate time varying instantaneous reproduction number during epidemics
      R
      •40•104•54•7•Updated Aug 25, 2026Aug 25, 2026

    • ebolasim_public

      Public
      C
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Aug 24, 2026Aug 24, 2026

    • SriLanka_FOI

      Public
      This repository hosts a Shiny web application to explore dengue transmission intensity in Sri Lanka at the district level (2017–2023). It provides interactive v…
      R
      •0•1•0•0•Updated Aug 24, 2026Aug 24, 2026

    • malariaverse

      Public
      💫 The Malariaverse 💫
      CSS
      •0•0•0•0•Updated Aug 24, 2026Aug 24, 2026

    • malariasimulation

      Public
      The malaria model
      R
      •
      Other
      •27•23•32•8•Updated Aug 24, 2026Aug 24, 2026

    • wodin-epimodels

      Public
      Shell
      •0•0•0•1•Updated Aug 21, 2026Aug 21, 2026

    • skadi

      Public
      0•0•2•17•Updated Aug 20, 2026Aug 20, 2026

    • icl-hbv_v2

      Public
      Updated repository for the HBV model developed at Imperial College London
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Aug 17, 2026Aug 17, 2026

    • naomi

      Public
      Naomi model for subnational HIV estimation
      R
      •
      Other
      •11•9•47•6•Updated Aug 17, 2026Aug 17, 2026

    • VIMC_malaria

      Public
      Imperial group malaria modelling for the Vaccine Impact Modelling Consortium
      HTML
      •1•0•0•0•Updated Aug 14, 2026Aug 14, 2026

    • YF_VIMC_Burden_Orderly

      Public
      Orderly framework for running VIMC yellow fever burden calculations using the YEP package
      R
      •0•1•0•0•Updated Aug 13, 2026Aug 13, 2026

    • RCodingSupport

      Public
      Utility package to accompany the R Coding Support module
      HTML
      •
      Other
      •0•0•0•0•Updated Aug 7, 2026Aug 7, 2026

    • foresite-orderly

      Public
      Orderly implementation of foresite malaria site files
      R
      •0•0•1•0•Updated Aug 7, 2026Aug 7, 2026

    • pika

      Public
      Lightweight package for estimating the optimal lag and rolling correlation by grouping variable between two time series
      R
      •
      Other
      •1•4•3•0•Updated Aug 5, 2026Aug 5, 2026

    • naomi.utils

      Public
      Utility Functions For Naomi Datasets
      R
      •
      Other
      •5•1•3•4•Updated Aug 4, 2026Aug 4, 2026

    • malaria_mortality_SR

      Public
      systematic review of RCTs on malaria mortality and all-cause mortality
      R
      •0•0•0•0•Updated Jul 31, 2026Jul 31, 2026

    • monty

      Public
      Monte Carlo Models :goat:
      R
      •
      Other
      •3•7•11•6•Updated Jul 31, 2026Jul 31, 2026
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