pyapprox/pyproject.toml at main · sandialabs/pyapprox · GitHub

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# Root pyproject.toml — dev tooling config only.
# Package build configs live in packages/*/pyproject.toml.

[tool.pytest.ini_options]
testpaths = [
    "packages/pyapprox/tests",
    "packages/pyapprox-benchmarks/tests",
    "tests/integration",
]
addopts = ["--import-mode=importlib"]
pythonpath = [
    ".",
    "packages/pyapprox/src",
    "packages/pyapprox-benchmarks/src",
    "packages/pyapprox-tutorials/src",
]
filterwarnings = [
    "ignore::DeprecationWarning:scipy.*:",
    "ignore::DeprecationWarning:torch.*:",
    "ignore::DeprecationWarning:skfem.*:",
    "ignore::UserWarning:scipy.optimize.*:",
    "ignore::scipy.sparse.SparseEfficiencyWarning:",
    "ignore:The balance properties of Sobol:UserWarning",
]
markers = [
    "slow_on: marks tests as slow (>5s). Args: backend names or '*' for all.",
    "slower_on: marks tests as slower (>30s). Args: backend names or '*' for all.",
    "slowest_on: marks tests as slowest (>60s). Args: backend names or '*' for all.",
]

[tool.coverage.run]
omit = [
    "*/__init__.py",
    "*/expdesign/likelihood/compute_numba.py",
    "*/expdesign/likelihood/compute_torch.py",
    "*/expdesign/likelihood/parallel_gaussian.py",
    "*/expdesign/objective/parallel_kl_objective.py",
]

[tool.coverage.report]
skip_empty = true
exclude_lines = [
    "@abstractmethod",
    "def __repr__",
]
exclude_also = [
    "raise NotImplementedError",
    "jacobian_implemented",
    "apply_jacobian_implemented",
    "hessian_implemented",
    "apply_hessian_implemented",
    "apply_weighted_hessian_implemented",
    "def plot",
]

[tool.ruff]
line-length = 88

[tool.ruff.lint]
select = ["E", "F", "W", "I"]
ignore = ["E402"]  # intentional lazy imports to reduce module load times

[tool.mypy]
strict = true
ignore_missing_imports = true
exclude = [
    "pyapprox_tutorials/",
]

[[tool.mypy.overrides]]
module = ["*"]
follow_imports = "silent"

[[tool.mypy.overrides]]
module = ["pyapprox.*"]
follow_imports = "normal"

[[tool.mypy.overrides]]
module = [
    "pyapprox.surrogates.kernels.matern_numba",
    "pyapprox.util.linalg.pivoted_cholesky_numba",
]
disallow_untyped_decorators = false
disallow_untyped_defs = false