The latest MPAS-Model v8.4.1-1.3 does not build (Gaea, ursa, etc)

[guoqing-noaa]

To repeat the error:

git clone --recursive https://github.com/ufs-community/MPAS-Model.git
cd MPAS-Model
module use modulefiles
module load mpas/ursa
make -j8 intel-mpi-ursa CORE=atmosphere

The error message:

mpiifort -D_MPI -DCORE_ATMOSPHERE -DMPAS_NAMELIST_SUFFIX=atmosphere -DMPAS_EXE_NAME=atmosphere_model -DSINGLE_PRECISION -DMPAS_NATIVE_TIMERS -DMPAS_GIT_VERSION=MPAS-v8.3.0-1.8-586-g85a3bb7c -DMPAS_BUILD_TARGET=intel-mpi-ursa -DMPA
S_SMIOL_SUPPORT -DCESMCOUPLED -DMPAS_USE_MPI_F08 -DMPAS -real-size 64 -O3 -convert big_endian -free -align array64byte  -c get_stochy_pattern.F90 -I/contrib/spack-stack/spack-stack-1.9.3/envs/ue-oneapi-2024.2.1/install/oneapi/2024
.2.1/parallel-netcdf-1.12.3-oeqtpxg/include -I/tmp/gge/MPAS-Model/src/external/SMIOL -I/contrib/spack-stack/spack-stack-1.9.3/envs/ue-oneapi-2024.2.1/install/oneapi/2024.2.1/parallel-netcdf-1.12.3-oeqtpxg/include -I/tmp/gge/MPAS-M
odel/src/core_atmosphere/physics/physics_noahmp/drivers/mpas -I/tmp/gge/MPAS-Model/src/core_atmosphere/physics/physics_noahmp/utility -I/tmp/gge/MPAS-Model/src/core_atmosphere/physics/physics_noahmp/src -I../../framework -I../../e
xternal/esmf_time_f90
stochy_patterngenerator.F90(10): error #7002: Error in opening the compiled module file.  Check INCLUDE paths.   [SPECTRAL_TRANSFORMS]
 use spectral_transforms, only: len_trie_ls, len_trio_ls, ls_dim, ls_max_node
-----^
stochy_patterngenerator.F90(14): error #7002: Error in opening the compiled module file.  Check INCLUDE paths.   [MPI_WRAPPER]
 use mpi_wrapper,only: is_rootpe, mp_bcst
-----^
stochy_patterngenerator.F90(10): error #6580: Name in only-list does not exist or is not accessible.   [LEN_TRIE_LS]
 use spectral_transforms, only: len_trie_ls, len_trio_ls, ls_dim, ls_max_node
--------------------------------^
stochy_patterngenerator.F90(10): error #6580: Name in only-list does not exist or is not accessible.   [LEN_TRIO_LS]
 use spectral_transforms, only: len_trie_ls, len_trio_ls, ls_dim, ls_max_node
---------------------------------------------^
stochy_patterngenerator.F90(10): error #6580: Name in only-list does not exist or is not accessible.   [LS_DIM]
 use spectral_transforms, only: len_trie_ls, len_trio_ls, ls_dim, ls_max_node
----------------------------------------------------------^
stochy_patterngenerator.F90(10): error #6580: Name in only-list does not exist or is not accessible.   [LS_MAX_NODE]
 use spectral_transforms, only: len_trie_ls, len_trio_ls, ls_dim, ls_max_node
------------------------------------------------------------------^
stochy_patterngenerator.F90(14): error #6580: Name in only-list does not exist or is not accessible.   [IS_ROOTPE]
 use mpi_wrapper,only: is_rootpe, mp_bcst
-----------------------^
stochy_patterngenerator.F90(14): error #6580: Name in only-list does not exist or is not accessible.   [MP_BCST]
 use mpi_wrapper,only: is_rootpe, mp_bcst
----------------------------------^
stochy_patterngenerator.F90(75): error #6406: Conflicting attributes or multiple declaration of name.   [IS_ROOTPE]
   if (is_rootpe()) then
-------^
stochy_patterngenerator.F90(75): error #6341: A logical data type is required in this context.   [IS_ROOTPE]
   if (is_rootpe()) then
-------^
stochy_patterngenerator.F90(111): error #6404: This name does not have a type, and must have an explicit type.   [LS_MAX_NODE]
      do j = 1, ls_max_node
----------------^
stochy_patterngenerator.F90(159): error #6406: Conflicting attributes or multiple declaration of name.   [IS_ROOTPE]
      if (is_rootpe()) then
----------^
stochy_patterngenerator.F90(159): error #6341: A logical data type is required in this context.   [IS_ROOTPE]
      if (is_rootpe()) then
----------^
stochy_patterngenerator.F90(184): error #6406: Conflicting attributes or multiple declaration of name.   [MP_BCST]
      call mp_bcst(count4)
-----------^
stochy_patterngenerator.F90(189): error #6406: Conflicting attributes or multiple declaration of name.   [IS_ROOTPE]
         if (is_rootpe()) then
-------------^
stochy_patterngenerator.F90(189): error #6341: A logical data type is required in this context.   [IS_ROOTPE]
         if (is_rootpe()) then
-------------^
stochy_patterngenerator.F90(59): error #6279: A specification expression object must be a dummy argument, a COMMON block object, or an object accessible through host or use association.   [LS_DIM]
   integer, intent(in) :: ls_nodes(ls_dim,3),nlevs
-----------------------------------^
stochy_patterngenerator.F90(59): error #6404: This name does not have a type, and must have an explicit type.   [LS_DIM]
   integer, intent(in) :: ls_nodes(ls_dim,3),nlevs
-----------------------------------^
stochy_patterngenerator.F90(97): error #7915: A specification expression object must be a dummy argument, a COMMON block object, or an object accessible through host or use association - may be used in multiple contained procedure
s.   [LEN_TRIE_LS]
      allocate(rpattern(np)%idx_e(len_trie_ls))
----------------------------------^
stochy_patterngenerator.F90(97): error #6404: This name does not have a type, and must have an explicit type.   [LEN_TRIE_LS]
      allocate(rpattern(np)%idx_e(len_trie_ls))
----------------------------------^
stochy_patterngenerator.F90(98): error #7915: A specification expression object must be a dummy argument, a COMMON block object, or an object accessible through host or use association - may be used in multiple contained[165/4894]
s.   [LEN_TRIO_LS]
      allocate(rpattern(np)%idx_o(len_trio_ls))
----------------------------------^
stochy_patterngenerator.F90(98): error #6404: This name does not have a type, and must have an explicit type.   [LEN_TRIO_LS]
      allocate(rpattern(np)%idx_o(len_trio_ls))
----------------------------------^
stochy_patterngenerator.F90(413): error #6406: Conflicting attributes or multiple declaration of name.   [IS_ROOTPE]
     if (is_rootpe()) print*, 'Gaussian variance spectrum'
---------^
stochy_patterngenerator.F90(413): error #6341: A logical data type is required in this context.   [IS_ROOTPE]
     if (is_rootpe()) print*, 'Gaussian variance spectrum'
---------^
stochy_patterngenerator.F90(419): error #6406: Conflicting attributes or multiple declaration of name.   [IS_ROOTPE]
        if (is_rootpe()) print*, 'Proper lengthscale condition'
------------^
stochy_patterngenerator.F90(419): error #6341: A logical data type is required in this context.   [IS_ROOTPE]
        if (is_rootpe()) print*, 'Proper lengthscale condition'
------------^
stochy_patterngenerator.F90(425): error #6406: Conflicting attributes or multiple declaration of name.   [IS_ROOTPE]
        if (is_rootpe()) print*, 'Not proper lengthscale condition'
------------^
stochy_patterngenerator.F90(425): error #6341: A logical data type is required in this context.   [IS_ROOTPE]
        if (is_rootpe()) print*, 'Not proper lengthscale condition'
------------^
stochy_patterngenerator.F90(430): error #6406: Conflicting attributes or multiple declaration of name.   [IS_ROOTPE]
        if (is_rootpe()) print*,'Finished'
------------^
stochy_patterngenerator.F90(430): error #6341: A logical data type is required in this context.   [IS_ROOTPE]
        if (is_rootpe()) print*,'Finished'
------------^
/tmp/ifortcvBBFA.i90(538): catastrophic error: Too many errors, exiting
compilation aborted for stochy_patterngenerator.F90 (code 1)
make[4]: *** [Makefile:53: stochy_patterngenerator.o] Error 1
make[4]: *** Waiting for unfinished jobs....
ifort: remark #10448: Intel(R) Fortran Compiler Classic (ifort) is now deprecated and will be discontinued late 2024. Intel recommends that customers transition now to using the LLVM-based Intel(R) Fortran Compiler (ifx) for conti
nued Windows* and Linux* support, new language support, new language features, and optimizations. Use '-diag-disable=10448' to disable this message.
ifort: remark #10448: Intel(R) Fortran Compiler Classic (ifort) is now deprecated and will be discontinued late 2024. Intel recommends that customers transition now to using the LLVM-based Intel(R) Fortran Compiler (ifx) for conti
nued Windows* and Linux* support, new language support, new language features, and optimizations. Use '-diag-disable=10448' to disable this message.
ifort: remark #10448: Intel(R) Fortran Compiler Classic (ifort) is now deprecated and will be discontinued late 2024. Intel recommends that customers transition now to using the LLVM-based Intel(R) Fortran Compiler (ifx) for conti
nued Windows* and Linux* support, new language support, new language features, and optimizations. Use '-diag-disable=10448' to disable this message.
get_stochy_pattern.F90(9): error #7002: Error in opening the compiled module file.  Check INCLUDE paths.   [STOCHY_DATA_MOD]
 use stochy_data_mod, only : gg_lats, gg_lons, inttyp, nskeb, nshum, nsppt, &
-----^
get_stochy_pattern.F90(16): error #7002: Error in opening the compiled module file.  Check INCLUDE paths.   [STOCHY_PATTERNGENERATOR_MOD]
 use stochy_patterngenerator_mod, only: random_pattern, ndimspec,           &
-----^
get_stochy_pattern.F90(39): error #6457: This derived type name has not been declared.   [RANDOM_PATTERN]
 type(random_pattern), intent(inout) :: rpattern(npatterns)
------^
get_stochy_pattern.F90(104): error #6457: This derived type name has not been declared.   [RANDOM_PATTERN]
 type(random_pattern), intent(inout) :: rpattern(npatterns)
------^
get_stochy_pattern.F90(231): error #6457: This derived type name has not been declared.   [RANDOM_PATTERN]
 type(random_pattern), intent(inout)  :: rpattern(npatterns)
------^
get_stochy_pattern.F90(298): error #6457: This derived type name has not been declared.   [RANDOM_PATTERN]
 type(random_pattern), intent(inout)  :: rpattern(npatterns)
------^
get_stochy_pattern.F90(351): error #6457: This derived type name has not been declared.   [RANDOM_PATTERN]
      type(random_pattern),        intent(in)  :: rpattern
-----------^
get_stochy_pattern.F90(390): error #6457: This derived type name has not been declared.   [RANDOM_PATTERN]
      type(random_pattern),        intent(in)  :: rpattern
-----------^
get_stochy_pattern.F90(635): error #6457: This derived type name has not been declared.   [RANDOM_PATTERN]
   type(random_pattern), intent(inout) :: rpattern
--------^
get_stochy_pattern.F90(9): error #6580: Name in only-list does not exist or is not accessible.   [GG_LATS]
 use stochy_data_mod, only : gg_lats, gg_lons, inttyp, nskeb, nshum, nsppt, &
-----------------------------^
get_stochy_pattern.F90(9): error #6580: Name in only-list does not exist or is not accessible.   [GG_LONS]
 use stochy_data_mod, only : gg_lats, gg_lons, inttyp, nskeb, nshum, nsppt, &
--------------------------------------^
get_stochy_pattern.F90(9): error #6580: Name in only-list does not exist or is not accessible.   [INTTYP]
 use stochy_data_mod, only : gg_lats, gg_lons, inttyp, nskeb, nshum, nsppt, &
-----------------------------------------------^
get_stochy_pattern.F90(9): error #6580: Name in only-list does not exist or is not accessible.   [NSKEB]
 use stochy_data_mod, only : gg_lats, gg_lons, inttyp, nskeb, nshum, nsppt, &
-------------------------------------------------------^
get_stochy_pattern.F90(9): error #6580: Name in only-list does not exist or is not accessible.   [NSHUM]
 use stochy_data_mod, only : gg_lats, gg_lons, inttyp, nskeb, nshum, nsppt, &
--------------------------------------------------------------^
get_stochy_pattern.F90(9): error #6580: Name in only-list does not exist or is not accessible.   [NSPPT]
 use stochy_data_mod, only : gg_lats, gg_lons, inttyp, nskeb, nshum, nsppt, &
---------------------------------------------------------------------^
get_stochy_pattern.F90(10): error #6580: Name in only-list does not exist or is not accessible.   [NOCNSPPT]
                             nocnsppt,nocnskeb,nepbl,nlndp,                 &
-----------------------------^
get_stochy_pattern.F90(10): error #6580: Name in only-list does not exist or is not accessible.   [NOCNSKEB]
                             nocnsppt,nocnskeb,nepbl,nlndp,                 &
--------------------------------------^
get_stochy_pattern.F90(10): error #6580: Name in only-list does not exist or is not accessible.   [NEPBL]
                             nocnsppt,nocnskeb,nepbl,nlndp,                 &
-----------------------------------------------^
get_stochy_pattern.F90(10): error #6580: Name in only-list does not exist or is not accessible.   [NLNDP]
                             nocnsppt,nocnskeb,nepbl,nlndp,                 &
-----------------------------------------------------^
get_stochy_pattern.F90(11): error #6580: Name in only-list does not exist or is not accessible.   [RNLAT]
                             rnlat, rpattern_sfc, rpattern_skeb,            &
-----------------------------^
get_stochy_pattern.F90(11): error #6580: Name in only-list does not exist or is not accessible.   [RPATTERN_SFC]
                             rnlat, rpattern_sfc, rpattern_skeb,            &
------------------------------------^
get_stochy_pattern.F90(11): error #6580: Name in only-list does not exist or is not accessible.   [RPATTERN_SKEB]
                             rnlat, rpattern_sfc, rpattern_skeb,            &
--------------------------------------------------^
get_stochy_pattern.F90(12): error #6580: Name in only-list does not exist or is not accessible.   [RPATTERN_SHUM]
                             rpattern_shum, rpattern_sppt, rpattern_ocnsppt,&
-----------------------------^
get_stochy_pattern.F90(12): error #6580: Name in only-list does not exist or is not accessible.   [RPATTERN_SPPT]
                             rpattern_shum, rpattern_sppt, rpattern_ocnsppt,&
--------------------------------------------^
get_stochy_pattern.F90(12): error #6580: Name in only-list does not exist or is not accessible.   [RPATTERN_OCNSPPT]
                             rpattern_shum, rpattern_sppt, rpattern_ocnsppt,&
-----------------------------------------------------------^
get_stochy_pattern.F90(13): error #6580: Name in only-list does not exist or is not accessible.   [RPATTERN_EPBL1]
                             rpattern_epbl1, rpattern_epbl2, skebu_save,    &
-----------------------------^
get_stochy_pattern.F90(13): error #6580: Name in only-list does not exist or is not accessible.   [RPATTERN_EPBL2]
                             rpattern_epbl1, rpattern_epbl2, skebu_save,    &
---------------------------------------------^
get_stochy_pattern.F90(13): error #6580: Name in only-list does not exist or is not accessible.   [SKEBU_SAVE]
                             rpattern_epbl1, rpattern_epbl2, skebu_save,    &
-------------------------------------------------------------^
get_stochy_pattern.F90(14): error #6580: Name in only-list does not exist or is not accessible.   [NSPP]
                             nspp,rpattern_spp, rpattern_ocnskeb,           &
-----------------------------^
get_stochy_pattern.F90(14): error #6580: Name in only-list does not exist or is not accessible.   [RPATTERN_SPP]
                             nspp,rpattern_spp, rpattern_ocnskeb,           &
----------------------------------^
/tmp/iforthpoC6D.i90(6263): catastrophic error: Too many errors, exiting
compilation aborted for get_stochy_pattern.F90 (code 1)
stochy_data_mod.F90(19): error #7002: Error in opening the compiled module file.  Check INCLUDE paths.   [STOCHY_PATTERNGENERATOR_MOD]
 use stochy_patterngenerator_mod, only: random_pattern, patterngenerator_init,&
-----^
stochy_data_mod.F90(33): error #6457: This derived type name has not been declared.   [RANDOM_PATTERN]
 type(random_pattern), public, save, allocatable, dimension(:) :: &
------^
stochy_data_mod.F90(44): error #6592: This symbol must be a defined parameter, an enumerator, or an argument of an inquiry function that evaluates to a compile-time constant.   [KIND_DBL_PREC]
 real(kind=kind_dbl_prec), public,allocatable :: sl(:)
-----------^
stochy_data_mod.F90(44): error #6211: A symbol must be a defined parameter in this context.   [KIND_DBL_PREC]
 real(kind=kind_dbl_prec), public,allocatable :: sl(:)
-----------^
stochy_data_mod.F90(44): error #6684: This is an incorrect value for a kind type parameter in this context.   [KIND]
 real(kind=kind_dbl_prec), public,allocatable :: sl(:)
------^
stochy_data_mod.F90(46): error #6683: A kind type parameter must be a compile-time constant.   [KIND_DBL_PREC]
 real(kind=kind_dbl_prec), public, parameter :: radius = 6.3712e+6
-----------^
stochy_data_mod.F90(49): error #6592: This symbol must be a defined parameter, an enumerator, or an argument of an inquiry function that evaluates to a compile-time constant.   [KIND_PHYS]
 real(kind=kind_phys),public, allocatable :: vfact_sppt(:),vfact_shum(:),vfact_skeb(:),vfact_spp(:)
-----------^
stochy_data_mod.F90(49): error #6211: A symbol must be a defined parameter in this context.   [KIND_PHYS]
 real(kind=kind_phys),public, allocatable :: vfact_sppt(:),vfact_shum(:),vfact_skeb(:),vfact_spp(:)
-----------^
stochy_data_mod.F90(49): error #6684: This is an incorrect value for a kind type parameter in this context.   [KIND]
 real(kind=kind_phys),public, allocatable :: vfact_sppt(:),vfact_shum(:),vfact_skeb(:),vfact_spp(:)
------^
stochy_data_mod.F90(50): error #6683: A kind type parameter must be a compile-time constant.   [KIND_PHYS]
 real(kind=kind_phys),public, allocatable :: skeb_vwts(:,:)
-----------^
stochy_data_mod.F90(52): error #6683: A kind type parameter must be a compile-time constant.   [KIND_DBL_PREC]
 real(kind=kind_dbl_prec),public, allocatable :: gg_lats(:),gg_lons(:)
-----------^
stochy_data_mod.F90(53): error #6683: A kind type parameter must be a compile-time constant.   [KIND_DBL_PREC]
 real(kind=kind_dbl_prec),public :: wlon,rnlat,rad2deg
-----------^
stochy_data_mod.F90(54): error #6683: A kind type parameter must be a compile-time constant.   [KIND_PHYS]
 real(kind=kind_phys),public, allocatable :: skebu_save(:,:,:),skebv_save(:,:,:)
-----------^
make[4]: *** [Makefile:53: get_stochy_pattern.o] Error 1
stochy_data_mod.F90(80): error #6683: A kind type parameter must be a compile-time constant.   [KIND_PHYS]
   real(kind=kind_phys), intent(in) :: delt
-------------^
stochy_data_mod.F90(82): error #6683: A kind type parameter must be a compile-time constant.   [KIND_DBL_PREC]
   real(kind=kind_dbl_prec) :: ones(6)
-------------^
stochy_data_mod.F90(89): error #6683: A kind type parameter must be a compile-time constant.   [KIND_DBL_PREC]
   real(kind_dbl_prec),allocatable :: noise_e(:,:),noise_o(:,:)
--------^
stochy_data_mod.F90(534): error #6683: A kind type parameter must be a compile-time constant.   [KIND_DBL_PREC]
   real(kind=kind_dbl_prec), intent(in) :: delt
-------------^
stochy_data_mod.F90(541): error #6683: A kind type parameter must be a compile-time constant.   [KIND_DBL_PREC]
   real(kind=kind_dbl_prec) :: gamma_sum,pi
-------------^
stochy_data_mod.F90(543): error #6683: A kind type parameter must be a compile-time constant.   [KIND_DBL_PREC]
   real(kind_dbl_prec),allocatable :: noise_e(:,:),noise_o(:,:)
--------^
stochy_data_mod.F90(827): error #6457: This derived type name has not been declared.   [RANDOM_PATTERN]
   type(random_pattern), intent(inout) :: rpattern
--------^
stochy_data_mod.F90(830): error #6683: A kind type parameter must be a compile-time constant.   [KIND_DBL_PREC]
   real(kind_dbl_prec),allocatable  :: pattern2d(:),pattern2din(:)
--------^
stochy_data_mod.F90(831): error #6683: A kind type parameter must be a compile-time constant.   [KIND_DBL_PREC]
   real(kind_dbl_prec) :: stdevin,varin
--------^
stochy_data_mod.F90(19): error #6580: Name in only-list does not exist or is not accessible.   [RANDOM_PATTERN]
 use stochy_patterngenerator_mod, only: random_pattern, patterngenerator_init,&
----------------------------------------^
stochy_data_mod.F90(19): error #6580: Name in only-list does not exist or is not accessible.   [PATTERNGENERATOR_INIT]
 use stochy_patterngenerator_mod, only: random_pattern, patterngenerator_init,&
--------------------------------------------------------^
stochy_data_mod.F90(20): error #6580: Name in only-list does not exist or is not accessible.   [GETNOISE]
 getnoise, getnoise_un, patterngenerator_advance, patterngenerator_advance_jb, ndimspec, &
-^
stochy_data_mod.F90(20): error #6580: Name in only-list does not exist or is not accessible.   [GETNOISE_UN]
 getnoise, getnoise_un, patterngenerator_advance, patterngenerator_advance_jb, ndimspec, &
-----------^
stochy_data_mod.F90(20): error #6580: Name in only-list does not exist or is not accessible.   [PATTERNGENERATOR_ADVANCE]
 getnoise, getnoise_un, patterngenerator_advance, patterngenerator_advance_jb, ndimspec, &
------------------------^
stochy_data_mod.F90(20): error #6580: Name in only-list does not exist or is not accessible.   [PATTERNGENERATOR_ADVANCE_JB]
 getnoise, getnoise_un, patterngenerator_advance, patterngenerator_advance_jb, ndimspec, &
--------------------------------------------------^
stochy_data_mod.F90(20): error #6580: Name in only-list does not exist or is not accessible.   [NDIMSPEC]
 getnoise, getnoise_un, patterngenerator_advance, patterngenerator_advance_jb, ndimspec, &
-------------------------------------------------------------------------------^
stochy_data_mod.F90(21): error #6580: Name in only-list does not exist or is not accessible.   [CHGRES_PATTERN]
 chgres_pattern, computevarspec_r
-^
/tmp/ifortGqBQFK.i90(6413): catastrophic error: Too many errors, exiting
compilation aborted for stochy_data_mod.F90 (code 1)
make[4]: *** [Makefile:53: stochy_data_mod.o] Error 1
make[4]: Leaving directory '/tmp/gge/MPAS-Model/src/core_atmosphere/stochastic_physics'
make[3]: *** [Makefile:69: physcore] Error 2
make[3]: Leaving directory '/tmp/gge/MPAS-Model/src/core_atmosphere'
make[2]: *** [Makefile:35: dycore] Error 2
make[2]: Leaving directory '/tmp/gge/MPAS-Model/src'
make[1]: *** [Makefile:1711: mpas_main] Error 2
make[1]: Leaving directory '/tmp/gge/MPAS-Model'
make: *** [Makefile:516: intel-mpi-ursa] Error 2

[guoqing-noaa]

The first fix is to add needed compiling dependencies in src/core_atmosphere/stochastic_physics,
See PR dtcenter/stochastic_physics#9

After applying this fix, we still got the following error message:

mpiifort -O3 -o atmosphere_model driver/*.o -L. -ldycore -lops -lframework -L/tmp/gge/MPAS-Model/src/external/SMIOL -lsmiolf -lsmiol -L/contrib/spack-stack/spack-stack-1.9.3/envs/ue-oneapi-2024.2.1/install/oneapi/2024.2.1/parallel
-netcdf-1.12.3-oeqtpxg/lib -lpnetcdf -I/tmp/gge/MPAS-Model/src/external/esmf_time_f90 -L/tmp/gge/MPAS-Model/src/external/esmf_time_f90 -lesmf_time -lmkl_intel_lp64 -lmkl_core -lmkl_sequential
ifort: remark #10448: Intel(R) Fortran Compiler Classic (ifort) is now deprecated and will be discontinued late 2024. Intel recommends that customers transition now to using the LLVM-based Intel(R) Fortran Compiler (ifx) for conti
nued Windows* and Linux* support, new language support, new language features, and optimizations. Use '-diag-disable=10448' to disable this message.
ld: ./libdycore.a(stochy_data_mod.o): in function `stochy_data_mod_mp_read_pattern_':
stochy_data_mod.F90:(.text+0xf7d): undefined reference to `netcdf_mp_nf90_get_var_1d_fourbyteint_'
ld: stochy_data_mod.F90:(.text+0x10ac): undefined reference to `netcdf_mp_nf90_get_var_1d_eightbytereal_'
ld: stochy_data_mod.F90:(.text+0x1190): undefined reference to `netcdf_mp_nf90_get_var_1d_eightbytereal_'
ld: ./libdycore.a(stochy_data_mod.o): in function `stochy_data_mod_mp_init_stochdata_ocn_':
stochy_data_mod.F90:(.text+0x24f5): undefined reference to `netcdf_mp_nf90_open_'
ld: stochy_data_mod.F90:(.text+0x2586): undefined reference to `netcdf_mp_nf90_get_att_one_fourbyteint_'
ld: stochy_data_mod.F90:(.text+0x26a9): undefined reference to `netcdf_mp_nf90_inq_varid_'
ld: stochy_data_mod.F90:(.text+0x272d): undefined reference to `netcdf_mp_nf90_inq_varid_'
ld: stochy_data_mod.F90:(.text+0x27d5): undefined reference to `netcdf_mp_nf90_inq_varid_'
ld: stochy_data_mod.F90:(.text+0x285c): undefined reference to `netcdf_mp_nf90_inq_varid_'
ld: stochy_data_mod.F90:(.text+0x2949): undefined reference to `netcdf_mp_nf90_inq_varid_'
ld: ./libdycore.a(stochy_data_mod.o):stochy_data_mod.F90:(.text+0x29d0): more undefined references to `netcdf_mp_nf90_inq_varid_' follow
ld: ./libdycore.a(stochy_data_mod.o): in function `stochy_data_mod_mp_init_stochdata_':
stochy_data_mod.F90:(.text+0x55c5): undefined reference to `netcdf_mp_nf90_open_'
ld: stochy_data_mod.F90:(.text+0x5656): undefined reference to `netcdf_mp_nf90_get_att_one_fourbyteint_'
ld: stochy_data_mod.F90:(.text+0x580f): undefined reference to `netcdf_mp_nf90_inq_varid_'
ld: stochy_data_mod.F90:(.text+0x5896): undefined reference to `netcdf_mp_nf90_inq_varid_'
ld: stochy_data_mod.F90:(.text+0x5983): undefined reference to `netcdf_mp_nf90_inq_varid_'
ld: stochy_data_mod.F90:(.text+0x5a0a): undefined reference to `netcdf_mp_nf90_inq_varid_'
ld: stochy_data_mod.F90:(.text+0x5ab5): undefined reference to `netcdf_mp_nf90_inq_varid_'
ld: ./libdycore.a(stochy_data_mod.o):stochy_data_mod.F90:(.text+0x5b3c): more undefined references to `netcdf_mp_nf90_inq_varid_' follow
ld: ./libdycore.a(get_stochy_pattern.o): in function `get_stochy_pattern_mod_mp_write_stoch_restart_atm_':
get_stochy_pattern.F90:(.text+0xc598): undefined reference to `netcdf_mp_nf90_create_'
ld: get_stochy_pattern.F90:(.text+0xc5c9): undefined reference to `netcdf_mp_nf90_put_att_one_fourbyteint_'
ld: get_stochy_pattern.F90:(.text+0xc603): undefined reference to `netcdf_mp_nf90_def_dim_'
ld: get_stochy_pattern.F90:(.text+0xc62f): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xc655): undefined reference to `netcdf_mp_nf90_def_dim_'
ld: get_stochy_pattern.F90:(.text+0xc681): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xc6b7): undefined reference to `netcdf_mp_nf90_def_dim_'
ld: get_stochy_pattern.F90:(.text+0xc6e3): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xc709): undefined reference to `netcdf_mp_nf90_def_dim_'
ld: get_stochy_pattern.F90:(.text+0xc735): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xc76b): undefined reference to `netcdf_mp_nf90_def_dim_'
ld: get_stochy_pattern.F90:(.text+0xc797): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xc7bd): undefined reference to `netcdf_mp_nf90_def_dim_'
ld: get_stochy_pattern.F90:(.text+0xc7e9): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xc81e): undefined reference to `netcdf_mp_nf90_def_dim_'
ld: get_stochy_pattern.F90:(.text+0xc84a): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xc8e5): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xc915): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xc998): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xc9c8): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xca69): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xca99): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xcb1c): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xcb4c): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xcc01): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xcc31): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xccb3): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xcce3): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xcd8b): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xcdbb): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xce3c): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xce6c): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xce87): undefined reference to `netcdf_mp_nf90_enddef_'
ld: get_stochy_pattern.F90:(.text+0xd0b6): undefined reference to `netcdf_mp_nf90_def_dim_'
ld: get_stochy_pattern.F90:(.text+0xd0e2): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xd173): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xd1a3): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xd228): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xd258): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xd408): undefined reference to `netcdf_mp_nf90_close_'
ld: ./libdycore.a(get_stochy_pattern.o): in function `get_stochy_pattern_mod_mp_write_pattern_':
get_stochy_pattern.F90:(.text+0xde18): undefined reference to `netcdf_mp_nf90_put_var_1d_fourbyteint_'
ld: get_stochy_pattern.F90:(.text+0xde97): undefined reference to `netcdf_mp_nf90_put_var_1d_eightbytereal_'
ld: get_stochy_pattern.F90:(.text+0xdf05): undefined reference to `netcdf_mp_nf90_put_var_1d_eightbytereal_'
ld: ./libdycore.a(get_stochy_pattern.o): in function `get_stochy_pattern_mod_mp_write_stoch_restart_ocn_':
get_stochy_pattern.F90:(.text+0xe546): undefined reference to `netcdf_mp_nf90_close_'
ld: get_stochy_pattern.F90:(.text+0xe5f1): undefined reference to `netcdf_mp_nf90_create_'
ld: get_stochy_pattern.F90:(.text+0xe622): undefined reference to `netcdf_mp_nf90_put_att_one_fourbyteint_'
ld: get_stochy_pattern.F90:(.text+0xe65c): undefined reference to `netcdf_mp_nf90_def_dim_'
ld: get_stochy_pattern.F90:(.text+0xe688): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xe6ae): undefined reference to `netcdf_mp_nf90_def_dim_'
ld: get_stochy_pattern.F90:(.text+0xe6da): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xe70c): undefined reference to `netcdf_mp_nf90_def_dim_'
ld: get_stochy_pattern.F90:(.text+0xe738): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xe7d3): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xe803): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xe880): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xe8b0): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xe94b): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xe97b): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xe9fe): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xea2e): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xeab1): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xeae1): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xeb64): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xeb94): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xec35): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xec65): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xecea): undefined reference to `netcdf_mp_nf90_def_var_manydims_'
ld: get_stochy_pattern.F90:(.text+0xed1a): undefined reference to `netcdf_mp_nf90_put_att_text_'
ld: get_stochy_pattern.F90:(.text+0xed35): undefined reference to `netcdf_mp_nf90_enddef_'
make[2]: *** [Makefile:12: mpas] Error 1
make[2]: Leaving directory '/tmp/gge/MPAS-Model/src'
make[1]: *** [Makefile:1711: mpas_main] Error 2
make[1]: Leaving directory '/tmp/gge/MPAS-Model'
make: *** [Makefile:516: intel-mpi-ursa] Error 2

Tag @clark-evans @dustinswales

[guoqing-noaa]

The above "netcdf" crash is because we cannot find correct "NETCDF" libraries.

Historically, "NETCDF" installations provide a "NETCDF" environment variable for the make system to find correct libraries. This practice has been widely used by WRF and then inherited by MPAS-Model.

Before adding the stochastic physics, MPAS-Model does not need NETCDF libraries, but use pnetcdf or pio libraries instead.

Now stochastic physics needs NETCDF explicitly. But spack-stack or many modern system installations no longer provide the "NETCDF" environmental variables. So it is desirable to update the make system to detect the NETCDF_C_ROOT and NETCDF_FORTRAN_ROOT directly, similar to the CMake system.