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80 followers · 95 following

Achievements

Achievement: Pair Extraordinairex3Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex3Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@COMBINE-Canberra @bioconda @WEHI-Education

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adamtaranto/README.md

Adam Taranto

I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.

👩‍💻 What I'm currently working on

🔭 Latest releases I've contributed to

  • Adamtaranto/dot-explorer (v0.2.1, 1 month ago) - A Python library for making fast dot-plot comparisons of DNA sequences powered by Rust
  • Adamtaranto/TIRmite (v1.5.0, 2 months ago) - Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.
  • Adamtaranto/teloclip (v0.4.0, 2 months ago) - A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  • Adamtaranto/deRIP2 (v0.5.1, 2 months ago) - Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments.
  • tseemann/mlst (v2.35.0, 4 months ago) - 🆔 Scan contig files against PubMLST typing schemes

GitHub Streak

GitHub Stats

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  1. teloclip teloclip Public

    A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

    Python 58 4

  2. TIRmite TIRmite Public

    Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.

    Python 10 4

  3. tanghaibao/jcvi tanghaibao/jcvi Public

    Python library to facilitate genome assembly, annotation, and comparative genomics

    Python 933 197

  4. flexidot-bio/flexidot flexidot-bio/flexidot Public

    Highly customizable, ambiguity-aware dotplots for visual sequence analyses

    Python 125 16

  5. pypopart pypopart Public

    Python reimplementation of PopART tool for creating haplotype networks

    Python 1

  6. dot-explorer dot-explorer Public

    A Python library for making fast dot-plot comparisons of DNA sequences powered by Rust

    Python