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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 402 165

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 525 repositories
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis's past year of commit activity
    TypeScript 10 BSD-3-Clause 1 15 20 Updated Nov 1, 2026
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims's past year of commit activity
    Python 0 MIT 1 5 2 Updated Nov 1, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 30 11 289 8 Updated Nov 1, 2026
  • ZeroMQ-XOP Public

    The ZeroMQ XOP enables Igor Pro to interface over the network using a ZeroMQ messaging layer and JSON as message format

    AllenInstitute/ZeroMQ-XOP's past year of commit activity
    C 10 BSD-3-Clause 8 13 (1 issue needs help) 4 Updated Oct 31, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader's past year of commit activity
    Python 9 MIT 1 0 0 Updated Oct 31, 2026
  • zarr-vectors-py Public

    Utilties and tools for working with data in the Zarr-vectors data structure

    AllenInstitute/zarr-vectors-py's past year of commit activity
    Python 11 BSD-3-Clause 3 1 0 Updated Oct 31, 2026
  • SEAAD_sandbox Public

    Landing page a set of public-facing apps that folks have developed based on SEA-AD data

    AllenInstitute/SEAAD_sandbox's past year of commit activity
    HTML 0 0 0 0 Updated Oct 30, 2026
  • dynamic_routing_analysis Public

    Tools for accessing, processing and presenting data from Dynamic Routing experiments.

    AllenInstitute/dynamic_routing_analysis's past year of commit activity
    Jupyter Notebook 3 0 1 0 Updated Oct 30, 2026
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access's past year of commit activity
    Jupyter Notebook 128 41 21 8 Updated Oct 30, 2026
  • arborist Public

    Trees are the most inspiring structures

    AllenInstitute/arborist's past year of commit activity
    Python 2 MIT 0 0 2 Updated Oct 30, 2026
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