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@BCCDC-PHL

BC Centre for Disease Control Public Health Laboratory

The BCCDC Public Health Laboratory is the primary public health and reference diagnostic testing facility for British Columbia.

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  1. ncov2019-artic-nf ncov2019-artic-nf Public

    Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Nextflow 4 1

  2. illumina-uploader illumina-uploader Public

    Watch for new files in Illumina sequencer and upload to remote server

    Python 4 1

  3. mpxv-artic-nf mpxv-artic-nf Public

    Nextflow 3 4

  4. covid-qc covid-qc Public

    Static site for displaying COVID-19 sequencing quality control data

    Clojure 5

Repositories

Showing 10 of 148 repositories
  • nfflu-results-collector Public
    BCCDC-PHL/nfflu-results-collector's past year of commit activity
    Python 2 1 0 0 Updated Oct 29, 2026
  • autocycler-nf Public

    Nextflow implementation of the Autocycler long-read assembler

    BCCDC-PHL/autocycler-nf's past year of commit activity
    Nextflow 1 0 1 0 Updated Oct 28, 2026
  • routine-nanopore-qc-site Public
    BCCDC-PHL/routine-nanopore-qc-site's past year of commit activity
    Clojure 0 0 0 0 Updated Oct 22, 2026
  • auto-fastq-symlink Public

    Automated symlinking of sequence data

    BCCDC-PHL/auto-fastq-symlink's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 22, 2026
  • auto-cpo Public

    Automation of Genomic Analyses for Carbapenemase-Producing Organisms (CPOs)

    BCCDC-PHL/auto-cpo's past year of commit activity
    Python 0 GPL-3.0 0 4 0 Updated Oct 21, 2026
  • symlink-seqs Public

    Create fastq symlinks for selected samples in sequencer output directories based on several criteria

    BCCDC-PHL/symlink-seqs's past year of commit activity
    Python 0 0 2 0 Updated Oct 21, 2026
  • fluscan-nf Public
    BCCDC-PHL/fluscan-nf's past year of commit activity
    Python 0 0 0 0 Updated Oct 21, 2026
  • routine-nanopore-qc-collector Public

    Collect Routine QC for Nanopore Sequence Data

    BCCDC-PHL/routine-nanopore-qc-collector's past year of commit activity
    Python 0 0 4 0 Updated Oct 20, 2026
  • nanopore-uploader Public

    A system for uploading Oxford Nanopore sequencing runs to remote servers via rsync

    BCCDC-PHL/nanopore-uploader's past year of commit activity
    Python 0 0 0 0 Updated Oct 20, 2026
  • auto-routine-nanopore-qc Public

    Automation for routine sequence QC on Oxford Nanopore Sequencing runs

    BCCDC-PHL/auto-routine-nanopore-qc's past year of commit activity
    Python 0 0 0 0 Updated Oct 19, 2026
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