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2 changes: 1 addition & 1 deletion docs/cdm53.html
Original file line number Diff line number Diff line change
Expand Up @@ -4654,7 +4654,7 @@ <h3 class="tabset tabset-pills anchored" data-anchor-id="measurement">MEASUREMEN
The meaning of Concept <a href="https://athena.ohdsi.org/search-terms/terms/4172703">4172703</a> for ‘=’ is identical to omission of a OPERATOR_CONCEPT_ID value. Since the use of this field is rare, it’s important when devising analyses to not to forget testing for the content of this field for values different from =.
</td>
<td style="text-align:left;">
Operators are &lt;, &lt;=, =, &gt;=, &gt; and these concepts belong to the ‘Meas Value Operator’ domain. <a href="https://athena.ohdsi.org/search-terms/terms?domain=Meas+Value+Operator&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted Concepts</a>. The operator_concept_id explictly refers to the value of the measurement. Leave it NULL if there’s an exact numeric value given (instead of putting ‘=’) or there’s no numeric value at all.
Operators are &lt;, &lt;=, =, &gt;=, &gt; and these concepts belong to the ‘Meas Value Operator’ domain. <a href="https://athena.ohdsi.org/search-terms/terms?domain=Meas+Value+Operator&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted Concepts</a>. The operator_concept_id explicitly refers to the value of the measurement. Leave it NULL if there’s an exact numeric value given (instead of putting ‘=’) or there’s no numeric value at all.
</td>
<td style="text-align:left;">
integer
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4 changes: 2 additions & 2 deletions docs/cdm54.html
Original file line number Diff line number Diff line change
Expand Up @@ -4893,7 +4893,7 @@ <h3 class="tabset tabset-pills anchored" data-anchor-id="measurement">MEASUREMEN
The meaning of Concept <a href="https://athena.ohdsi.org/search-terms/terms/4172703">4172703</a> for ‘=’ is identical to omission of a OPERATOR_CONCEPT_ID value. Since the use of this field is rare, it’s important when devising analyses to not to forget testing for the content of this field for values different from =.
</td>
<td style="text-align:left;">
Operators are &lt;, &lt;=, =, &gt;=, &gt; and these concepts belong to the ‘Meas Value Operator’ domain. <a href="https://athena.ohdsi.org/search-terms/terms?domain=Meas+Value+Operator&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted Concepts</a>. The operator_concept_id explictly refers to the value of the measurement. Leave it NULL if there’s an exact numeric value given (instead of putting ‘=’) or there’s no numeric value at all.
Operators are &lt;, &lt;=, =, &gt;=, &gt; and these concepts belong to the ‘Meas Value Operator’ domain. <a href="https://athena.ohdsi.org/search-terms/terms?domain=Meas+Value+Operator&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted Concepts</a>. The operator_concept_id explicitly refers to the value of the measurement. Leave it NULL if there’s an exact numeric value given (instead of putting ‘=’) or there’s no numeric value at all.
</td>
<td style="text-align:left;">
integer
Expand Down Expand Up @@ -10552,7 +10552,7 @@ <h3 class="tabset tabset-pills anchored" data-anchor-id="episode">EPISODE</h3>
episode_start_date
</td>
<td style="text-align:left;">
The date when the Episode beings.
The date when the Episode begins.
</td>
<td style="text-align:left;">
Please see [article] for how to define an Episode start date.
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2 changes: 1 addition & 1 deletion docs/cdm54ToolingSupport.html
Original file line number Diff line number Diff line change
Expand Up @@ -560,7 +560,7 @@ <h2 class="anchored" data-anchor-id="criteria">Criteria</h2>
</tr>
<tr class="even">
<td>Atlas Cohort</td>
<td>Used in te Atlas User Interface for cohort definition criteria (directly, or via ‘Add attribute’)</td>
<td>Used in the Atlas User Interface for cohort definition criteria (directly, or via ‘Add attribute’)</td>
<td>https://atlas-demo.ohdsi.org/</td>
</tr>
<tr class="odd">
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4 changes: 2 additions & 2 deletions docs/cdm55.html
Original file line number Diff line number Diff line change
Expand Up @@ -4895,7 +4895,7 @@ <h3 class="tabset tabset-pills anchored" data-anchor-id="measurement">MEASUREMEN
The meaning of Concept <a href="https://athena.ohdsi.org/search-terms/terms/4172703">4172703</a> for ‘=’ is identical to omission of a OPERATOR_CONCEPT_ID value. Since the use of this field is rare, it’s important when devising analyses to not to forget testing for the content of this field for values different from =.
</td>
<td style="text-align:left;">
Operators are &lt;, &lt;=, =, &gt;=, &gt; and these concepts belong to the ‘Meas Value Operator’ domain. <a href="https://athena.ohdsi.org/search-terms/terms?domain=Meas+Value+Operator&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted Concepts</a>. The operator_concept_id explictly refers to the value of the measurement. Leave it NULL if there’s an exact numeric value given (instead of putting ‘=’) or there’s no numeric value at all.
Operators are &lt;, &lt;=, =, &gt;=, &gt; and these concepts belong to the ‘Meas Value Operator’ domain. <a href="https://athena.ohdsi.org/search-terms/terms?domain=Meas+Value+Operator&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted Concepts</a>. The operator_concept_id explicitly refers to the value of the measurement. Leave it NULL if there’s an exact numeric value given (instead of putting ‘=’) or there’s no numeric value at all.
</td>
<td style="text-align:left;">
integer
Expand Down Expand Up @@ -10720,7 +10720,7 @@ <h3 class="tabset tabset-pills anchored" data-anchor-id="episode">EPISODE</h3>
episode_start_date
</td>
<td style="text-align:left;">
The date when the Episode beings.
The date when the Episode begins.
</td>
<td style="text-align:left;">
Please see [article] for how to define an Episode start date.
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2 changes: 1 addition & 1 deletion docs/cdm60.html
Original file line number Diff line number Diff line change
Expand Up @@ -4691,7 +4691,7 @@ <h3 class="tabset tabset-pills anchored" data-anchor-id="measurement">MEASUREMEN
The meaning of Concept <a href="https://athena.ohdsi.org/search-terms/terms/4172703">4172703</a> for ‘=’ is identical to omission of a OPERATOR_CONCEPT_ID value. Since the use of this field is rare, it’s important when devising analyses to not to forget testing for the content of this field for values different from =.
</td>
<td style="text-align:left;">
Operators are &lt;, &lt;=, =, &gt;=, &gt; and these concepts belong to the ‘Meas Value Operator’ domain. <a href="https://athena.ohdsi.org/search-terms/terms?domain=Meas+Value+Operator&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted Concepts</a>. The operator_concept_id explictly refers to the value of the measurement. Leave it NULL if there’s an exact numeric value given (instead of putting ‘=’) or there’s no numeric value at all.
Operators are &lt;, &lt;=, =, &gt;=, &gt; and these concepts belong to the ‘Meas Value Operator’ domain. <a href="https://athena.ohdsi.org/search-terms/terms?domain=Meas+Value+Operator&amp;standardConcept=Standard&amp;page=1&amp;pageSize=15&amp;query=">Accepted Concepts</a>. The operator_concept_id explicitly refers to the value of the measurement. Leave it NULL if there’s an exact numeric value given (instead of putting ‘=’) or there’s no numeric value at all.
</td>
<td style="text-align:left;">
integer
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2 changes: 1 addition & 1 deletion docs/oncology.html
Original file line number Diff line number Diff line change
Expand Up @@ -611,7 +611,7 @@ <h3 class="tabset tabset-pills anchored" data-anchor-id="episode">episode</h3>
episode_start_date
</td>
<td style="text-align:left;">
The date when the Episode beings.
The date when the Episode begins.
</td>
<td style="text-align:left;">
Please see [article] for how to define an Episode start date.
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16 changes: 8 additions & 8 deletions docs/search.json

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2 changes: 1 addition & 1 deletion inst/csv/OMOP_CDMv5.3_Field_Level.csv
Original file line number Diff line number Diff line change
Expand Up @@ -149,7 +149,7 @@ measurement,measurement_date,Yes,date,Use this date to determine the date of the
measurement,measurement_datetime,No,datetime,NA,This is not required. If a source does not specify datetime the convention is to set to NULL.,No,No,NA,NA,NA,NA
measurement,measurement_time,No,varchar(10),NA,This is present for backwards compatibility and will be deprecated in an upcoming version.,No,No,NA,NA,NA,NA
measurement,measurement_type_concept_id,Yes,integer,"This field can be used to determine the provenance of the Measurement record, as in whether the measurement was from an EHR system, insurance claim, registry, or other sources.","Choose the MEASUREMENT_TYPE_CONCEPT_ID that best represents the provenance of the record, for example whether it came from an EHR record or billing claim. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&standardConcept=Standard&page=1&pageSize=15&query=). A more detailed explanation of each Type Concept can be found on the [vocabulary wiki](https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT).",No,Yes,CONCEPT,CONCEPT_ID,Type Concept,NA
measurement,operator_concept_id,No,integer,"The meaning of Concept [4172703](https://athena.ohdsi.org/search-terms/terms/4172703) for '=' is identical to omission of a OPERATOR_CONCEPT_ID value. Since the use of this field is rare, it's important when devising analyses to not to forget testing for the content of this field for values different from =.","Operators are <, <=, =, >=, > and these concepts belong to the 'Meas Value Operator' domain. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Meas+Value+Operator&standardConcept=Standard&page=1&pageSize=15&query=). The operator_concept_id explictly refers to the value of the measurement. Leave it NULL if there's an exact numeric value given (instead of putting '=') or there's no numeric value at all.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA
measurement,operator_concept_id,No,integer,"The meaning of Concept [4172703](https://athena.ohdsi.org/search-terms/terms/4172703) for '=' is identical to omission of a OPERATOR_CONCEPT_ID value. Since the use of this field is rare, it's important when devising analyses to not to forget testing for the content of this field for values different from =.","Operators are <, <=, =, >=, > and these concepts belong to the 'Meas Value Operator' domain. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Meas+Value+Operator&standardConcept=Standard&page=1&pageSize=15&query=). The operator_concept_id explicitly refers to the value of the measurement. Leave it NULL if there's an exact numeric value given (instead of putting '=') or there's no numeric value at all.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA
measurement,value_as_number,No,float,"This is the numerical value of the Result of the Measurement, if available. Note that measurements such as blood pressures will be split into their component parts i.e. one record for systolic, one record for diastolic.",[Convention for negative values](https://ohdsi.github.io/Themis/negative_value_as_number.html),No,No,NA,NA,NA,NA
measurement,value_as_concept_id,No,integer,If the raw data gives a categorial result for measurements those values are captured and mapped to standard concepts. This can be done manually or using the \Maps to value\ relationship in the vocabulary.,"If there is no categorial result in the source data, set VALUE_AS_CONCEPT_ID to NULL, if there is a categorial result in a source data but without mapping, set VALUE_AS_CONCEPT_ID to 0, else map to a CONCEPT_ID. These are also mapped using the \Maps to value\ relationship in the vocabulary.",No,Yes,CONCEPT,CONCEPT_ID,NA,NA
measurement,unit_concept_id,No,integer,"At present, there isn't a prescribed unit for individual measurements, such as Hemoglobin A1C, meaning it's not obligatory to express these measurements as a percentage. UNIT_SOURCE_VALUES should be linked to a Standard Concept within the Unit domain that most accurately reflects the unit provided in the source data.","If the source data does not include units, set UNIT_CONCEPT_ID to NULL. If units are provided but not mapped, set UNIT_CONCEPT_ID to 0. Otherwise, map the units to a CONCEPT_ID. Remember that units are case-sensitive in vocabulary.",No,Yes,CONCEPT,CONCEPT_ID,Unit,NA
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4 changes: 2 additions & 2 deletions inst/csv/OMOP_CDMv5.4_Field_Level.csv
Original file line number Diff line number Diff line change
Expand Up @@ -154,7 +154,7 @@ measurement,measurement_date,TRUE,date,Use this date to determine the date of th
measurement,measurement_datetime,FALSE,datetime,NA,This is not required. If a source does not specify datetime the convention is to set to NULL.,FALSE,FALSE,NA,NA,NA,NA
measurement,measurement_time,FALSE,varchar(10),NA,This is present for backwards compatibility and will be deprecated in an upcoming version.,FALSE,FALSE,NA,NA,NA,NA
measurement,measurement_type_concept_id,TRUE,integer,"This field can be used to determine the provenance of the Measurement record, as in whether the measurement was from an EHR system, insurance claim, registry, or other sources.","Choose the MEASUREMENT_TYPE_CONCEPT_ID that best represents the provenance of the record, for example whether it came from an EHR record or billing claim. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Type+Concept&standardConcept=Standard&page=1&pageSize=15&query=). A more detailed explanation of each Type Concept can be found on the [vocabulary wiki](https://github.com/OHDSI/Vocabulary-v5.0/wiki/Vocab.-TYPE_CONCEPT).",FALSE,TRUE,CONCEPT,CONCEPT_ID,Type Concept,NA
measurement,operator_concept_id,FALSE,integer,"The meaning of Concept [4172703](https://athena.ohdsi.org/search-terms/terms/4172703) for '=' is identical to omission of a OPERATOR_CONCEPT_ID value. Since the use of this field is rare, it's important when devising analyses to not to forget testing for the content of this field for values different from =.","Operators are <, <=, =, >=, > and these concepts belong to the 'Meas Value Operator' domain. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Meas+Value+Operator&standardConcept=Standard&page=1&pageSize=15&query=). The operator_concept_id explictly refers to the value of the measurement. Leave it NULL if there's an exact numeric value given (instead of putting '=') or there's no numeric value at all.",FALSE,TRUE,CONCEPT,CONCEPT_ID,NA,NA
measurement,operator_concept_id,FALSE,integer,"The meaning of Concept [4172703](https://athena.ohdsi.org/search-terms/terms/4172703) for '=' is identical to omission of a OPERATOR_CONCEPT_ID value. Since the use of this field is rare, it's important when devising analyses to not to forget testing for the content of this field for values different from =.","Operators are <, <=, =, >=, > and these concepts belong to the 'Meas Value Operator' domain. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Meas+Value+Operator&standardConcept=Standard&page=1&pageSize=15&query=). The operator_concept_id explicitly refers to the value of the measurement. Leave it NULL if there's an exact numeric value given (instead of putting '=') or there's no numeric value at all.",FALSE,TRUE,CONCEPT,CONCEPT_ID,NA,NA
measurement,value_as_number,FALSE,float,"This is the numerical value of the Result of the Measurement, if available. Note that measurements such as blood pressures will be split into their component parts i.e. one record for systolic, one record for diastolic.",[Convention for negative values](https://ohdsi.github.io/Themis/negative_value_as_number.html),FALSE,FALSE,NA,NA,NA,NA
measurement,value_as_concept_id,FALSE,integer,"If the raw data gives a categorial result for measurements those values are captured and mapped to standard concepts. This can be done manually or using the ""Maps to value"" relationship in the vocabulary.","If there is no categorial result in the source data, set VALUE_AS_CONCEPT_ID to NULL, if there is a categorial result in a source data but without mapping, set VALUE_AS_CONCEPT_ID to 0, else map to a CONCEPT_ID. These are also mapped using the ""Maps to value"" relationship in the vocabulary.",FALSE,TRUE,CONCEPT,CONCEPT_ID,NA,NA
measurement,unit_concept_id,FALSE,integer,"At present, there isn't a prescribed unit for individual measurements, such as Hemoglobin A1C, meaning it's not obligatory to express these measurements as a percentage. UNIT_SOURCE_VALUES should be linked to a Standard Concept within the Unit domain that most accurately reflects the unit provided in the source data.","If the source data does not include units, set UNIT_CONCEPT_ID to NULL. If units are provided but not mapped, set UNIT_CONCEPT_ID to 0. Otherwise, map the units to a CONCEPT_ID. Remember that units are case-sensitive in vocabulary.",FALSE,TRUE,CONCEPT,CONCEPT_ID,Unit,NA
Expand Down Expand Up @@ -371,7 +371,7 @@ condition era.",NA,FALSE,FALSE,NA,NA,NA,NA
episode,episode_id,TRUE,integer,A unique identifier for each Episode.,NA,TRUE,FALSE,NA,NA,NA,NA
episode,person_id,TRUE,integer,The PERSON_ID of the PERSON for whom the episode is recorded.,NA,FALSE,TRUE,PERSON,PERSON_ID,NA,NA
episode,episode_concept_id,TRUE,integer,"The EPISODE_CONCEPT_ID represents the kind abstraction related to the disease phase, outcome or treatment.","Choose a concept in the Episode domain that best represents the ongoing disease phase, outcome, or treatment. Please see [article] for cancers and [article] for non-cancers describing how these are defined. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Episode&page=1&pageSize=15&query=)",FALSE,TRUE,CONCEPT,CONCEPT_ID,Episode,NA
episode,episode_start_date,TRUE,date,The date when the Episode beings.,Please see [article] for how to define an Episode start date.,FALSE,FALSE,NA,NA,NA,NA
episode,episode_start_date,TRUE,date,The date when the Episode begins.,Please see [article] for how to define an Episode start date.,FALSE,FALSE,NA,NA,NA,NA
episode,episode_start_datetime,FALSE,datetime,The date and time when the Episode begins.,NA,FALSE,FALSE,NA,NA,NA,NA
episode,episode_end_date,FALSE,date,The date when the instance of the Episode is considered to have ended.,Please see [article] for how to define an Episode end date.,FALSE,FALSE,NA,NA,NA,NA
episode,episode_end_datetime,FALSE,datetime,The date when the instance of the Episode is considered to have ended.,NA,FALSE,FALSE,NA,NA,NA,NA
Expand Down
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