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Try using regex to replace parse_ion function in conversion tools

Status: Open.

#98 In aiproteomics/aiproteomics;

· raar1 opened on Nov 13, 2024

Make keras transformer option to one-hot encode charge

Status: Open.

#94 In aiproteomics/aiproteomics;

· dsmits opened on Nov 5, 2024

Add pY to output layer of keras transformer

Status: Open.

#93 In aiproteomics/aiproteomics;

· dsmits opened on Nov 5, 2024

See if wecan use standard keras transformer

Status: Open.

#91 In aiproteomics/aiproteomics;

· dsmits opened on Oct 23, 2024

Check demo notebook for MSMS fragmentation

Status: Open.

#85 In aiproteomics/aiproteomics;

· raar1 opened on Sep 19, 2024

Check correctness of notebook

Status: Open.

#83 In aiproteomics/aiproteomics;

· dsmits opened on Sep 11, 2024

Create model diagram with explanation

Status: Open.

#82 In aiproteomics/aiproteomics;

· dsmits opened on Sep 11, 2024

Check limits of snellius

Status: Open.

#81 In aiproteomics/aiproteomics;

· dsmits opened on Sep 11, 2024

adapt spectral library generation

Status: Open.

#80 In aiproteomics/aiproteomics;

· dsmits opened on Sep 11, 2024

adapt output layer to include peaks for neutral losses

Status: Open.

#79 In aiproteomics/aiproteomics;

· dsmits opened on Sep 11, 2024

Model has to accept an increased alphabet

Status: Open.

#78 In aiproteomics/aiproteomics;

· dsmits opened on Sep 11, 2024

Adapt transformer model for phosphoproteomics

Status: Open.

#77 In aiproteomics/aiproteomics;

· dsmits opened on Sep 11, 2024