fix(kernel): finish the pinned resolution port and the three regressions it exposed

__tests__/evaluation/results/precision-flask-d73fa1c-0ae0b138.json

@@ -0,0 +1,60 @@
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__tests__/evaluation/results/precision-json-aa391dc-0ae0b138.json

@@ -0,0 +1,200 @@
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+      "expect": "present",
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+}

__tests__/evaluation/results/precision-svelte-5895c63-0ae0b138.json

@@ -0,0 +1,35 @@
+{
+  "timestamp": "2026-10-29T14:53:04.397Z",
+  "corpus": "svelte",
+  "repo": "https://github.com/sveltejs/svelte.git",
+  "commit": "5895c63",
+  "codegraphSha": "0ae0b138",
+  "summary": {
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+  "edges": 65384,
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+      "expect": "absent",
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+      "found": [],
+      "missingEndpoints": []
+    }
+  ]
+}

__tests__/evaluation/results/precision-vite-8492422-0ae0b138.json

@@ -0,0 +1,95 @@
+{
+  "timestamp": "2026-10-29T14:52:56.623Z",
+  "corpus": "vite",
+  "repo": "https://github.com/vitejs/vite.git",
+  "commit": "8492422",
+  "codegraphSha": "0ae0b138",
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+    {
+      "caseId": "vite-sealed-module-defineConfig",
+      "expect": "absent",
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+    {
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+      "expect": "present",
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+}