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cleme
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qiime_test_data
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58 Commits
58 Commits
add_taxa
add_taxa
adjust_seq_orientation
adjust_seq_orientation
alpha_diversity
alpha_diversity
alpha_rarefaction
alpha_rarefaction
beta_diversity
beta_diversity
beta_diversity_through_plots
beta_diversity_through_plots
beta_significance
beta_significance
compare_taxa_summaries
compare_taxa_summaries
compute_core_microbiome
compute_core_microbiome
conditional_uncovered_probability
conditional_uncovered_probability
convert_otu_table_to_unifrac_sample_mapping
convert_otu_table_to_unifrac_sample_mapping
convert_unifrac_sample_mapping_to_otu_table
convert_unifrac_sample_mapping_to_otu_table
core_qiime_analyses
core_qiime_analyses
filter_fasta
filter_fasta
filter_otus_from_otu_table
filter_otus_from_otu_table
filter_samples_from_otu_table
filter_samples_from_otu_table
jackknifed_beta_diversity
jackknifed_beta_diversity
make_distance_boxplots
make_distance_boxplots
make_distance_comparison_plots
make_distance_comparison_plots
make_otu_heatmap_html
make_otu_heatmap_html
make_otu_network
make_otu_network
make_otu_table
make_otu_table
make_tep
make_tep
map_reads_to_reference
map_reads_to_reference
merge_otu_tables
merge_otu_tables
multiple_rarefactions
multiple_rarefactions
multiple_rarefactions_even_depth
multiple_rarefactions_even_depth
otu_category_significance
otu_category_significance
parallel_align_seqs_pynast
parallel_align_seqs_pynast
parallel_alpha_diversity
parallel_alpha_diversity
parallel_assign_taxonomy_blast
parallel_assign_taxonomy_blast
parallel_assign_taxonomy_rdp
parallel_assign_taxonomy_rdp
parallel_beta_diversity
parallel_beta_diversity
parallel_blast
parallel_blast
parallel_identify_chimeric_seqs
parallel_identify_chimeric_seqs
parallel_map_reads_to_reference
parallel_map_reads_to_reference
parallel_multiple_rarefactions
parallel_multiple_rarefactions
parallel_pick_otus_blast
parallel_pick_otus_blast
parallel_pick_otus_trie
parallel_pick_otus_trie
parallel_pick_otus_uclust_ref
parallel_pick_otus_uclust_ref
per_library_stats
per_library_stats
pick_otus_through_otu_table
pick_otus_through_otu_table
pick_reference_otus_through_otu_table
pick_reference_otus_through_otu_table
pick_subsampled_reference_otus_through_otu_table
pick_subsampled_reference_otus_through_otu_table
plot_rank_abundance_graph
plot_rank_abundance_graph
shared_phylotypes
shared_phylotypes
simsam
simsam
single_rarefaction
single_rarefaction
sort_otu_table
sort_otu_table
split_libraries_fastq
split_libraries_fastq
split_otu_table
split_otu_table
split_otu_table_by_taxonomy
split_otu_table_by_taxonomy
start_parallel_jobs
start_parallel_jobs
summarize_otu_by_cat
summarize_otu_by_cat
summarize_taxa
summarize_taxa
summarize_taxa_through_plots
summarize_taxa_through_plots
supervised_learning
supervised_learning
transform_coordinate_matrices
transform_coordinate_matrices
trflp_file_to_otu_table
trflp_file_to_otu_table
README.md
README.md
script_usage_tests.py
script_usage_tests.py
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qiime_test_data
Test input and output for QIIME scripts.
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Test input and output for QIIME scripts.
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