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  1. EVcouplings EVcouplings Public

    Evolutionary couplings from protein and RNA sequence alignments

    Jupyter Notebook 315 83

  2. EVzoom EVzoom Public

    Visually explore covariation in protein families

    JavaScript 41 6

  3. plmc plmc Public

    Inference of couplings in proteins and RNAs from sequence variation

    C 128 39

  4. EVmutation EVmutation Public

    Mutation effects predicted from sequence co-variation

    HTML 75 14

  5. EVE EVE Public

    Forked from OATML/EVE

    Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning"

    Python 10 1

  6. EVEscape EVEscape Public

    Forked from OATML-Markslab/EVEscape

    Official repository for the paper "Learning from pre-pandemic data to forecast viral antibody escape"

    Python 1

Repositories

Showing 10 of 33 repositories
  • mlab-groceries Public

    Vibe coded web app managing Marks lab groceries (because Amazon sucks)

    debbiemarkslab/mlab-groceries's past year of commit activity
    HTML 2 0 0 0 Updated Jul 8, 2026
  • debbiemarkslab/ML-antibody-discovery's past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated May 7, 2026
  • EVcouplings Public

    Evolutionary couplings from protein and RNA sequence alignments

    debbiemarkslab/EVcouplings's past year of commit activity
    Jupyter Notebook 315 83 59 (2 issues need help) 7 Updated Apr 20, 2026
  • popEVE-genecollapsing Public

    popEVE's gene collapsing simulation for discovering disease-gene associations from de novo variants

    debbiemarkslab/popEVE-genecollapsing's past year of commit activity
    Python 0 MIT 0 1 0 Updated Apr 15, 2026
  • priority-viruses Public

    Official repository for the paper "Evaluating variant effect prediction across viruses"

    debbiemarkslab/priority-viruses's past year of commit activity
    Jupyter Notebook 22 2 0 0 Updated Mar 30, 2026
  • LOL-EVE Public

    Placehoolder for LOL-EVE model and publication analysis scripts

    debbiemarkslab/LOL-EVE's past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated Sep 26, 2025
  • popEVE Public
    debbiemarkslab/popEVE's past year of commit activity
    Python 54 GPL-3.0 6 1 0 Updated Sep 4, 2025
  • PROSE Public
    debbiemarkslab/PROSE's past year of commit activity
    Python 2 MIT 0 0 0 Updated May 29, 2025
  • ML_affinity_maturation Public

    Repository containing the code performing ML assisted affinity maturation

    debbiemarkslab/ML_affinity_maturation's past year of commit activity
    Jupyter Notebook 7 MIT 0 0 0 Updated Apr 7, 2025
  • sequenceMDS Public
    debbiemarkslab/sequenceMDS's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 22, 2024