Skip to content

docs: cover CLI tokens, WES and TRS #136

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
uniqueg merged 3 commits into from
Nov 13, 2026
Merged

docs: cover CLI tokens, WES and TRS #136

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
96f0308
docs: cover CLI tokens, WES and TRS
uniqueg Nov 13, 2026
f043046
Merge remote-tracking branch 'origin/main' into docs/124-cli-tokens-wes
uniqueg Nov 13, 2026
be4934e
docs: drop device-flow login from CLI page
uniqueg Nov 13, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion docs/demos/index.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -22,7 +22,7 @@ Each demo has one of these states:
|---|---|---|---|
| [Token exchange testbed][repo-txf] | Current | Per-hop OAuth 2.0 token exchange with LS Login along a chain of services, from a front end through a WES and the proTES gateway to TES nodes. Runs on your computer against a local mock of LS Login. | [Token Exchange Testbed](token-exchange-testbed.md) |
| [NVFlare on WES and TES testbed][repo-nvflare] | Current | A federated learning job with NVIDIA FLARE, started through GA4GH WES, with one GA4GH TES task per site, also through proTES. Runs on your computer with two local Funnel instances and synthetic data. | [NVFlare Testbed](nvflare-wes-testbed.md) |
| [GA4GH SDK upgrade][repo-sdk] | Current | Plan and guide of a BioHackathon Europe 2026 project. Its goal: the command line tool of the GA4GH SDK sends tasks to proTES with an LS Login token. The tool doesn't send tokens yet, so it can only use services that need none; nothing to run beyond building it. | [Use the Command Line](../researchers/cli.md) and the [project docs][docs-sdk] |
| [GA4GH SDK upgrade][repo-sdk] | Current | Plan and guide of a BioHackathon Europe 2026 project. Its goal: the command line tool of the GA4GH SDK sends tasks to proTES with an LS Login token. The tool sends tokens and runs TES tasks and WES workflows now; it can't log in to LS Login itself yet. | [Use the Command Line](../researchers/cli.md) and the [project docs][docs-sdk] |
| [Hybrid cloud via TES][repo-hybrid] (`demo-tes-hybrid-cloud`) | Current | A Snakemake workflow on the TES services of several Nodes, one after the other, and then on all of them through proTES. Runs on your computer with two local Funnel instances, proTES 0.6.0 and an S3 service, or on your own services. | [Run Workflows Across Nodes](../researchers/federated-workflows.md) |
| [Crypt4GH with proTES][repo-crypt4gh] (`protes-middleware-crypt4gh`) | Outdated | A task on Crypt4GH-encrypted files that are decrypted only inside the task's container, through a proTES middleware and Funnel. Needs proTES 0.3.0 or earlier, as later versions run plugins instead of middlewares. | [Crypt4GH with proTES](../researchers/crypt4gh-with-protes.md) |
| [Demo 2023-ecp-f2f][repo-f2f] (`elixir-cloud-demos`) | Retired | Tasks with `curl` and `py-tes` on TESK and Funnel, distribution through proTES, and a CWL workflow with `cwl-tes`, as shown at the ELIXIR Compute Platform meeting in February 2023. | [Retired demos](#retired-demos) |
Expand Down
Loading
Loading