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mesoSPIM

Mesoscale light-sheet microscopes for imaging in cleared tissue.

37 followers
Switzerland
https://www.mesospim.org
@mesospim.bsky.social
info@mesospim.org

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benchtop-hardware benchtop-hardware Public

Hardware documentation for mesoSPIM-Bechtop microscope project

HTML 33 5
mesoSPIM-control mesoSPIM-control Public

Image acquisition software for mesoSPIM light-sheet microscopes.

Python 49 20
mesoSPIM-hardware-documentation mesoSPIM-hardware-documentation Public

Hardware documentation for the mesoSPIM microscope project

35 4
mesoSPIM-PSFanalysis mesoSPIM-PSFanalysis Public

Analysis code for light-sheet PSFs

Jupyter Notebook 7

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Showing 10 of 12 repositories

mesoSPIM-control Public
Image acquisition software for mesoSPIM light-sheet microscopes.

mesoSPIM/mesoSPIM-control's past year of commit activity

Python 49 GPL-3.0 20 1 2 Updated Oct 12, 2026
mesoSPIM-hardware-documentation Public
Hardware documentation for the mesoSPIM microscope project

mesoSPIM/mesoSPIM-hardware-documentation's past year of commit activity

35 GPL-3.0 4 2 0 Updated Jun 17, 2026
benchtop-hardware Public
Hardware documentation for mesoSPIM-Bechtop microscope project

mesoSPIM/benchtop-hardware's past year of commit activity

HTML 33 GPL-3.0 5 0 1 Updated May 11, 2026
image-processing Public
Collection of python notebooks for mesoSPIM image processing (file format conversion, etc)

mesoSPIM/image-processing's past year of commit activity

Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Feb 27, 2025
optical-simulations Public
Proof of principle simulations of excitation and detection optical arms in mesoSPIM systems

mesoSPIM/optical-simulations's past year of commit activity

1 GPL-3.0 0 0 0 Updated May 30, 2024
mesoSPIM-PSFanalysis Public
Analysis code for light-sheet PSFs

mesoSPIM/mesoSPIM-PSFanalysis's past year of commit activity

Jupyter Notebook 7 MIT 0 1 0 Updated Mar 18, 2024
mesoSPIM-lazy-loader Public
Lazy loader napari plugin for mesoSPIM datasets

mesoSPIM/mesoSPIM-lazy-loader's past year of commit activity

Python 2 GPL-3.0 0 3 0 Updated Apr 6, 2023
mesoSPIM-python-tools Public
Collection of general-purpose tools for handling mesoSPIM data with Python.

mesoSPIM/mesoSPIM-python-tools's past year of commit activity

Python 0 BSD-3-Clause 0 0 0 Updated Apr 6, 2023
pipython Public Forked from royerlab/pipython
PIPython is a collection of Python modules to access a PI device and process GCS data.

mesoSPIM/pipython's past year of commit activity

Python 0 3 0 0 Updated Oct 14, 2019
mesoSPIMmat Public
MATLAB tools for handling mesoSPIM data

mesoSPIM/mesoSPIMmat's past year of commit activity

MATLAB 4 GPL-3.0 0 1 0 Updated Sep 16, 2019

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