NCBI C++ Toolkit package sources

StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.

Incremental building of phylogenetic distance trees

SRA Tools

ncbi-vdb

Log monitoring and gathering infrastructure to feed analytics

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

Support material for the article on SRA Lite

Tutorials and guides for using the Sequence Read Archive