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- Status: Open.#35 In neherlab/ncov-simple;
Filter out env samples
enhancementNew feature or requestNew feature or requestStatus: Open.#34 In neherlab/ncov-simple;Use prealignment from ncov-ingest, save computation time
enhancementNew feature or requestNew feature or requestStatus: Open.#23 In neherlab/ncov-simple;Give samples with quick sampling->submission a relaxed upper clock filter limit, tighten upper limit otherwise
enhancementNew feature or requestNew feature or requestStatus: Open.#22 In neherlab/ncov-simple;Private mutation counts are very high ~30 for regional lineages in countries that don't submit to Genbank
blockedNeed upstream changesNeed upstream changesStatus: Open.#20 In neherlab/ncov-simple;Add clock_deviation, rare mutations and other QC as colorings to help tune diagnostic.py cutoffs
enhancementNew feature or requestNew feature or requestStatus: Open.#18 In neherlab/ncov-simple;Switch off prioritisation for continents/global but keep for countries
enhancementNew feature or requestNew feature or requestStatus: Open.#17 In neherlab/ncov-simple;Build tree with only pango designated sequences for Nextclade pango assignments
enhancementNew feature or requestNew feature or requestStatus: Open.#14 In neherlab/ncov-simple;Why is nuc:7851T (AY.4 defining) such a mess on the Europe tree?
bugSomething isn't workingSomething isn't workinginvalidThis doesn't seem rightThis doesn't seem rightStatus: Open.#13 In neherlab/ncov-simple;