Issues

• Add ARIES

  enhancement
  Enhancement

  nf-core/multiplesequencealign#259 · Filter by author vagkaratzas opened on Nov 1, 2026

• Add nf-test for the different cases present in ci.yml

  enhancement
  nf-core/multiplesequencealign#247 · Filter by author JoseEspinosa opened on May 20, 2026

• Fasta test file containing seatoxin reference sequences incorrectly named

  enhancementgood first issue
  nf-core/multiplesequencealign#242 · Filter by author JoseEspinosa opened on Oct 3, 2025 · version 2.0
  1

• Add Re-Align-P

  enhancementnot urgent
  nf-core/multiplesequencealign#238 · Filter by author luisas opened on Aug 18, 2025 · version 2.0

• Fix download runner test

  bug
  nf-core/multiplesequencealign#237 · Filter by author luisas opened on Jul 9, 2025 · version 2.0

• Update and test new documentation for template 3.3 gpu profile

  enhancement
  nf-core/multiplesequencealign#236 · Filter by author luisas opened on Jul 9, 2025 · version 1.1.2

• Add config for very low computational resources

  enhancement
  nf-core/multiplesequencealign#234 · Filter by author luisas opened on Jun 5, 2025 · version 1.1.2

• Add support to .faa files

  enhancement
  nf-core/multiplesequencealign#233 · Filter by author luisas opened on Jun 5, 2025 · version 1.1.2

• Add preprocessing step to optionally clean the sequence headers

  enhancement
  nf-core/multiplesequencealign#193 · Filter by author luisas opened on Feb 7, 2025 · version 2.0

• Fix required arguments once the schema validation is fixed

  enhancement
  nf-core/multiplesequencealign#190 · Filter by author luisas opened on Feb 6, 2025 · version 1.1.2

• Add validation for combination of tools (tree and align)

  enhancement
  nf-core/multiplesequencealign#188 · Filter by author luisas opened on Jan 31, 2025 · version 2.0