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    18 repositories

    • benchmark

      Public
      TeX
      •
      MIT License
      •3•1•0•0•Updated Jun 11, 2021Jun 11, 2021

    • chloroplast_landscape

      Public
      Chloroplast landscape for different plant species
      MIT License
      •0•1•14•0•Updated Mar 10, 2021Mar 10, 2021

    • chloroExtractor

      Public
      Perl
      •
      MIT License
      •8•4•17•0•Updated May 1, 2019May 1, 2019

    • fastg-parser

      Public
      Parses the FastG files and extracts target assemblies
      Perl
      •
      MIT License
      •0•0•2•0•Updated May 1, 2019May 1, 2019

    • docker

      Public
      Build scripts for docker images to run chloroExtractor
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Apr 8, 2019Apr 8, 2019

    • chloroExtractor-testsuite

      Public
      Tests for our chloroExtractor
      Perl
      •
      MIT License
      •0•0•0•0•Updated Apr 8, 2019Apr 8, 2019

    • fast-plast_docker

      Public
      A docker solution for Fast-Plast (https://github.com/mrmckain/Fast-Plast)
      Dockerfile
      •0•0•0•0•Updated Oct 15, 2018Oct 15, 2018

    • GetOrganelle_docker

      Public
      A docker solution for GetOrganelle (https://github.com/Kinggerm/GetOrganelle)
      Dockerfile
      •0•0•0•0•Updated Oct 1, 2018Oct 1, 2018

    • IOGA_docker

      Public
      A docker solution for IOGA (https://github.com/holmrenser/IOGA)
      Dockerfile
      •0•0•0•0•Updated Sep 27, 2018Sep 27, 2018

    • NOVOPlasty_docker

      Public
      A docker solution for NOVOPlasty (https://github.com/ndierckx/NOVOPlasty)
      Dockerfile
      •0•0•0•0•Updated Sep 26, 2018Sep 26, 2018

    • ORG.Asm_docker

      Public
      A docker solution for ORG.Asm (https://git.metabarcoding.org/org-asm/org-asm)
      MIT License
      •0•0•0•0•Updated Sep 26, 2018Sep 26, 2018

    • screening_container

      Public
      This container is used to screen for new chloroplasts
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Jul 24, 2018Jul 24, 2018

    • fastq-shuffle

      Public
      A shuffle program for FASTQ files
      Perl
      •
      MIT License
      •2•7•3•0•Updated Jul 11, 2018Jul 11, 2018

    • chloroExtractor-dockerbase

      Public
      Docker base image for our chloroExtractor Docker container
      Shell
      •
      MIT License
      •0•0•0•0•Updated Jul 9, 2018Jul 9, 2018

    • simulate

      Public
      Protocol to generate simulated sequence reads for evaluation of chloroExtractor
      Shell
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2017Sep 22, 2017

    • bats

      Public
      Bash Automated Testing System
      Shell
      •
      MIT License
      •507•0•0•0•Updated Sep 4, 2017Sep 4, 2017

    • chloroExtractorLogo

      Public
      All stuff concerning the logo of our chloroExtractor
      MIT License
      •1•0•0•0•Updated Aug 30, 2017Aug 30, 2017

    • annoBTD

      Public
      Annotation software for Verdant.
      Perl
      •1•0•0•0•Updated Aug 12, 2016Aug 12, 2016
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