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1. NygenAnalytics/CyteArc NygenAnalytics/CyteArc Public

   Fast, out-of-core single-cell analysis in Python for RNA, ATAC, protein, and multi-omic data, scaling to 100M+ cells. Mount remote datasets, work within a memory budget, and trace every result thro…

   Python 3 2

2. NygenAnalytics/CyteType NygenAnalytics/CyteType Public

   Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

   Python 139 15

3. NygenAnalytics/CyteTypeR NygenAnalytics/CyteTypeR Public

   Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

   R 41 2

4. NygenAnalytics/CyteOnto NygenAnalytics/CyteOnto Public

   Automated semantic comparison of cell type annotations

   Python 6 2

5. NygenAnalytics/scarf NygenAnalytics/scarf Public

   Memory-efficient analysis of single-cell data.

   Python 125 18