few custom made scripts for the multi-omics dataset

(only the scripts have been updated)

Name		Name	Last commit message	Last commit date
GO_sandhya.ipynb		GO_sandhya.ipynb
HAF_results_analysation.R		HAF_results_analysation.R
README.md		README.md
af.py		af.py
af4_vs_envdata.py		af4_vs_envdata.py
base_evolved_coverage_analysis.R		base_evolved_coverage_analysis.R
base_highquality_snps.R		base_highquality_snps.R
bashGO.sh		bashGO.sh
bashaf.sh		bashaf.sh
bashasc.sh		bashasc.sh
bashbuffer.sh		bashbuffer.sh
bedtools_intersect.sh		bedtools_intersect.sh
cfu_plot.ipynb		cfu_plot.ipynb
convert_text_csv_samtools_stats.R		convert_text_csv_samtools_stats.R
cor.py		cor.py
drugbank_data_extraction.ipynb		drugbank_data_extraction.ipynb
env.py		env.py
estimate_af.R		estimate_af.R
estimate_af_NE.R		estimate_af_NE.R
fad_fmn_pca.R		fad_fmn_pca.R
filter and find common snps within.py		filter and find common snps within.py
harp_window_size_calculaton_based_on_recmbination_generations.R		harp_window_size_calculaton_based_on_recmbination_generations.R
lfmm.R		lfmm.R
lfmm.sh		lfmm.sh
marpipeline_chr1.R		marpipeline_chr1.R
pca_adapted_chisq_test.R		pca_adapted_chisq_test.R
pca_geotif.py		pca_geotif.py
pipeline.sh		pipeline.sh
plink.sh		plink.sh
plink_whole.sh		plink_whole.sh
plotGT.R		plotGT.R
rasterpca.R		rasterpca.R
t_test.ipynb		t_test.ipynb
tree_seq_recording.ipynb		tree_seq_recording.ipynb
trends_HBP_DBP.ipynb		trends_HBP_DBP.ipynb
trends_HBP_DBP_windows_3.ipynb		trends_HBP_DBP_windows_3.ipynb
variant.sh		variant.sh

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