fix: point table validation to public sanitizer - #1165
Merged
LucaMarconato merged 2 commits intoAug 19, 2026
Conversation
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #1165 +/- ##
=======================================
Coverage 92.41% 92.41%
=======================================
Files 52 52
Lines 7874 7874
=======================================
Hits 7277 7277
Misses 597 597
🚀 New features to boost your workflow:
|
stanbot8
marked this pull request as ready for review
July 24, 2026 09:46
stanbot8
force-pushed
the
fix/1154-sanitize-table-path
branch
from
July 24, 2026 13:16
35c771b to
63a5780
Compare
LucaMarconato
approved these changes
Aug 19, 2026
LucaMarconato
enabled auto-merge (squash)
August 19, 2026 11:45
Comment on lines
+632
to
+633
| ValidationError, | ||
| match=r"`spatialdata\.sanitize_table\(adata\)`", |
Member
There was a problem hiding this comment.
Good, gonna decrease the coverage a bit.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Summary
The table-name validation error in issue #1154 points to
spatialdata.utils.sanitize_table(adata). This path does not exist. The error now points tospatialdata.sanitize_table(adata). Closes #1154.Design
Use the top-level function that
spatialdataexports. Keep validation and sanitization behavior unchanged.The implementation changes
src/spatialdata/_core/validation.py.Tests
The regression test fails on
mainand passes on this branch. The full suite passes with 1,365 tests, 7 skips, and 1 expected failure. The installed wheel passes the reported sanitize-and-validate workflow.The tests are in
tests/models/test_models.py.All 7 CPU matrix jobs passed.
Commands
uv run pytest tests/models/test_models.py::TestModels::test_table_model_invalid_name_suggests_public_sanitizer -q