shimlab

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1. BLAZE BLAZE Public

   SingleCell Nanopore sequencing data analysis

   Python 74 10

2. NanoSplicer NanoSplicer Public

   Python 31 8

3. mako mako Public

   Differential analysis of RNA modifications using Oxford Nanopore Technologies (ONT) direct RNA sequencing data

   Nextflow 3 2

4. PALAVA PALAVA Public

   Python 2 1

5. WaviFM WaviFM Public

   [DEPRECATED] Active development moved to shimlab/WaveFactor (see linked site) | Wavelet-based variationally-inferred sparse factor model for spatial transcriptomics data

   C++ 1

6. WaveFactor WaveFactor Public

   Prior-informed Bayesian factor model for spatial transcriptomics that accounts for multi-scale spatial information via 2D wavelet transforms

   C++ 1