Bump version to 0.6.3 (not tagged)

CITATION.cff

@@ -8,7 +8,7 @@ authors:
   affiliation: University of California-Riverside
   orcid: "https://orcid.org/0000-0002-7591-0020"
 title: "MATPredict: MAT locus identification in Fungi"
-version: 0.6.2
+version: 0.6.3
 doi: TBD
 date-released: 2026-10-15
 url: "https://github.com/stajichlab/MATPredict"

README.md

@@ -8,7 +8,7 @@ idiomorph or mating type it is (for example Plus/Minus, MAT1-1/MAT1-2, HD/PR
 alleles). Every reference record traces to a publication or a validated
 deposit, and every call reports the evidence behind it.
 
-Current release: [`v0.6.1`](https://github.com/stajichlab/MATPredict/releases/tag/v0.6.1).
+Current release: [`v0.6.2`](https://github.com/stajichlab/MATPredict/releases/tag/v0.6.2).
 Changes: [CHANGELOG.md](CHANGELOG.md).
 
 ## Contents
@@ -531,14 +531,14 @@ No paper describes MATPredict yet. Cite the software and the release you used.
 The citation metadata is in [CITATION.cff](CITATION.cff); GitHub shows it under
 "Cite this repository".
 
-> Stajich JE. MATPredict: MAT locus identification in Fungi. Version 0.6.1.
+> Stajich JE. MATPredict: MAT locus identification in Fungi. Version 0.6.3.
 > https://github.com/stajichlab/MATPredict
 
 ```bibtex
 @software{matpredict,
   author  = {Stajich, Jason E.},
   title   = {MATPredict: MAT locus identification in Fungi},
-  version = {0.6.1},
+  version = {0.6.3},
   url     = {https://github.com/stajichlab/MATPredict},
   year    = {2026}
 }

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "MATPredict"
-version = "0.6.2"
+version = "0.6.3"
 description = "Fungal MAT locus annotator/classifier"
 authors = [{name = "Jason Stajich", email = "jason.stajich@ucr.edu"}]
 requires-python = ">=3.11"

web/intro/about.md

@@ -25,13 +25,13 @@ The command-line software is cited in the project README, under
 [Citation](https://github.com/stajichlab/MATPredict#citation). The citation metadata is in
 [CITATION.cff](https://github.com/stajichlab/MATPredict/blob/main/CITATION.cff), which GitHub shows under "Cite this repository".
 
-> Stajich JE. MATPredict: MAT locus identification in Fungi. Version 0.6.2. https://github.com/stajichlab/MATPredict
+> Stajich JE. MATPredict: MAT locus identification in Fungi. Version 0.6.3. https://github.com/stajichlab/MATPredict
 
 ```bibtex
 @software{matpredict,
   author  = {Stajich, Jason E.},
   title   = {MATPredict: MAT locus identification in Fungi},
-  version = {0.6.2},
+  version = {0.6.3},
   url     = {https://github.com/stajichlab/MATPredict},
   year    = {2026}
 }

web/spike/README.md

@@ -16,7 +16,7 @@ Prototype on branch `wasm-spike`. Not wired into the package or the release. See
 ```bash
 python3 -m pip wheel . --no-deps -w web/spike/dist     # from the repo root
 cd web/spike && npm install
-node import_check.mjs dist/matpredict-0.6.1-py3-none-any.whl
+node import_check.mjs dist/matpredict-0.6.3-py3-none-any.whl
 node seam_probe.mjs
 ```
 

web/spike/browser/run-detect.mjs

@@ -15,7 +15,7 @@ const [genome, outDir, ...rest] = process.argv.slice(2);
 const phylum = rest[rest.indexOf("--phylum") + 1] ?? "Ascomycota";
 const ENGINE = process.env.ENGINE ?? "losat";  // tblastn engine: "losat" or "mmseqs"
 const home = "/Users/jstajich/projects/MATPredict";
-const WHEEL = process.env.WHEEL ?? join(home, "web/spike/dist/matpredict-0.6.1-py3-none-any.whl");
+const WHEEL = process.env.WHEEL ?? join(home, "web/spike/dist/matpredict-0.6.3-py3-none-any.whl");
 const DB_DIR = process.env.DB_DIR ?? join(home, "db");
 const WASM_DIR = process.env.WASM_DIR ?? join(process.env.HOME, "wasm-build");
 const LOC_DIR = process.env.LOCALIZER_DIR ?? join(home, "web/spike/localizer");

web/spike/page/assemble.sh

@@ -7,7 +7,7 @@ BUNDLE="$1"
 HERE="$(cd "$(dirname "$0")" && pwd)"
 REPO="$(cd "$HERE/../../.." && pwd)"
 DB="${2:-$REPO/db}"
-WHEEL="${3:-$REPO/web/spike/dist/matpredict-0.6.1-py3-none-any.whl}"
+WHEEL="${3:-$REPO/web/spike/dist/matpredict-0.6.3-py3-none-any.whl}"
 A="$HERE/_assets"
 mkdir -p "$A"
 ln -sfn "$(cd "$BUNDLE" && pwd)" "$A/bundle"

web/spike/seam_probe.mjs

@@ -7,7 +7,7 @@ import { readFileSync, readdirSync, statSync } from "node:fs";
 import { join, relative, basename } from "node:path";
 
 const REPO = new URL("../../", import.meta.url).pathname;
-const wheel = join(REPO, "web/spike/dist/matpredict-0.6.1-py3-none-any.whl");
+const wheel = join(REPO, "web/spike/dist/matpredict-0.6.3-py3-none-any.whl");
 const dbDir = join(REPO, "db");
 const genome = join(REPO, "testset/MAT_loci3.fasta");