Skip to content
@talkowski-lab

Talkowski Laboratory

Talkowski Laboratory at Massachusetts General Hospital & The Broad Institute

Popular repositories Loading

  1. gnomad-sv-pipeline gnomad-sv-pipeline Public archive

    Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)

    R 38 15

  2. svtk svtk Public archive

    Python 36 12

  3. SV-Adjudicator SV-Adjudicator Public

    Python 25 5

  4. rCNV2 rCNV2 Public

    Aggregation and analyses of rare CNVs across diseases

    R 15 4

  5. Holmes Holmes Public

    Pipeline for structural variation detection from liWGS libraries

    Shell 5

  6. variant-interpretation variant-interpretation Public

    WDL 5 6

Repositories

Showing 10 of 54 repositories
  • talkowski-lab/variant-interpretation's past year of commit activity
    WDL 5 6 0 1 Updated Oct 30, 2026
  • lr-pipeline Public

    A pipeline for annotating long-read callsets.

    talkowski-lab/lr-pipeline's past year of commit activity
    WDL 4 MIT 1 9 0 Updated Oct 30, 2026
  • gatk-sv-testkit Public

    Toolkit for gatk-sv pipeline testing

    talkowski-lab/gatk-sv-testkit's past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Oct 28, 2026
  • gcp-audit Public

    GCP cost auditor: one row per billable resource, with list-price cost and last use.

    talkowski-lab/gcp-audit's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 28, 2026
  • outlier-exclusion Public

    Workflows for filtering gATK-SV callsets

    talkowski-lab/outlier-exclusion's past year of commit activity
    WDL 0 0 1 0 Updated Oct 20, 2026
  • talkowski-lab/mei-lr-association's past year of commit activity
    WDL 0 0 0 0 Updated Oct 16, 2026
  • AoU_meQTL Public
    talkowski-lab/AoU_meQTL's past year of commit activity
    WDL 0 0 0 0 Updated Oct 6, 2026
  • vapor Public Forked from mills-lab/vapor

    Tool for the validation of structural genomic rearrangements using long read sequence data

    talkowski-lab/vapor's past year of commit activity
    Python 0 3 0 0 Updated Sep 30, 2026
  • preprocessing Public
    talkowski-lab/preprocessing's past year of commit activity
    WDL 0 0 0 0 Updated Sep 22, 2026
  • talkowski-lab/denovo-snv-indels's past year of commit activity
    Python 0 0 0 0 Updated Sep 21, 2026

Most used topics

Loading…