biocomputing

Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

A Python package for the simulation of organoids for the purpose of studying Organoid Intelligence (OI) and Organoid Learning (OL).

Concept paper for using living mycelium as a self-repairing substrate for AI, plus a Python prototype: scikit-learn models that predict mycelium growth from environmental readings, served with FastAPI. Bring your own data; no bio-interface yet.

A closed-loop UDP interface between Cortical Labs' CL1 biocomputer and Unreal Engine: receive living-neuron spikes as gameplay events, send electrical stimulation back as feedback.

A Bidirectional LSTM Network and EEG-Response Organoid for simulating neural responses to classical piano music.

bio-inspired computing course assignments and projects, Fall-2018

Projects written in CELLO

The content of this repository belongs to the Bio-Computing coursework of my Integrated BS-MS in Biology from Indian Institute of Science Education and Research Mohali, India.

Single Python Script to mutate polygons and evaluate their fitness based on a target image.

A curated list of awesome Biological Computing (Biocomputing) resources.

NeuroBridge API — 123 endpoints, 55+ analysis modules for brain organoid data. Organoid IQ, STDP, attractors, consciousness metrics, and more.

No-framework browser visualizer for cl-sdk simulator streams, recording replay, and channel-grid/3D previews.

Aurora Survival BioCLIP - iOS native

Using K Means and R Language, K-Means algorithm applied the elbow method to get the optimal k, which is equal to 7.

Applied Particle Swarm Optimization (PSO) to find global maxima and minima of multivariable functions.

Open-source Brazilian research prototype: DNA-storage encoding, explainable AI, classical BB84 simulation and Merkle proofs. Educational, not production.

OrganoidIntelligence: brain-organoid-on-chip intelligence, wetware computing, and bioelectronic roadmaps

Verified a 4-state Deterministic Finite Automata (DFA) using multi McCulloch–Pitt neural networks.

🧠 Organoid Intelligence Biocomputer Simulator — HH + Izhikevich neuron models, MEA burst detection, DishBrain Pong, Baltimore Declaration ethics monitor. Built by Antigravity (Google DeepMind).

Replicating a Multi-Functional Synthetic Gene Network