chemotaxis

A Finite Element Approximation of a Cahn--Hilliard Tumour Model with FEniCS, by Dennis Trautwein (2020).

Artificial agents developing chemotaxis using probabilistic spiking perceptrons

A sample application attempting to simulate Chemotaxis, the movement of an organism either toward or away from chemicals

[PNAS Nexus 2024] Learning Optimal Integration of Spatial and Temporal Information.

Partial Lean 4 formalization of Chemotaxis III: stationary estimates, modes, compactness and conditional bifurcation results

Inverse reinforcement learning on real trajectories of active microscopic swimmers (starting with C. elegans chemotaxis), to infer the reward function they behave as if optimizing — MaxEnt IRL, Deep MaxEnt IRL, AIRL.

Multiscale modeling of E.coli chemotaxis

Research proposal for the study of C. serpentina nesting behaviors using novel methods and robotics.

This repository contains a program to simulate a chemotaxis process from a parabolic-elliptic system of partial differential equations.

An implementation of the CDF v2-UL (Coordinate-Driven Forcing v2 Ultra-Linearization) Agent Compiler for bounded homeostatic and autopoietic control. Features neuro-symbolic warehouse planning, plant drought senescence, mycelial networks vs TSP, E. coli gradient adaptation, and rodent foraging simulations.

Teach a virtual bacterium to find food with reinforcement learning, and watch it rediscover E. coli's run-and-tumble strategy.

Scala/JavaFX GUI Chemotaxis Visualizer with Temporal Manipulation

C. elegans konnektom simülasyonu — 41 nöron, 98 sinaps, tarayıcıda çalışan yapay yaşam

Desktop program for 2D chemotaxis assays: cell centroids in, Prism-ready tables, spider plots and rose diagrams out

This repository will have all the code for figures and videos constructed for the paper "Analysis and Simulation of a Novel Run-and-Tumble Model with Autochemotaxis", which will appear in the Journal of Mathematical Biology.

A bilingual chemotaxis board game for science education, by Friskoli / SZU-SIAT iGEM.

Endothelial cells moving in a chemical field

Computational implementation of a mechanistic model of C. elegans adaptive chemotaxis behavior. The minimal model is based on a neural circuit composed of a sensory neuron and a motor neuron.