computational-genomics

simplified cellranger for long-read data

Research into the viability of leveraging deep learning to successfully generate synthetic biological samples and identify predictive genetic variants.

Course Assignment on Clustering of Spatial Transcriptomics Data

The Advanced Genome Browser

Computational Genomics with R のサンプル集です

🏥 This is my attempt at the selection tests for the GSOC 2019 project, "Human history and data visualization" under the Canadian Center for Computational Genomics

Biplots, Volcano plots, PCA plots, Heatmaps and more Computational Genomics data created and visualized during University of Pittsburgh course, Computational Biology (BIOSC1540), with Dr. Miler Lee

This repository contains all the materials for the final project of "Introduction to Bioinformatics", conducted in the fall of 2023 at Sharif University of Technology. The project explores the evolution of flight in birds, covering a wide range of Bioinformatics tasks like Gene Expression Analysis, Genome Assembly, Sequencing and Alignment.

Computational analysis of single-nucleus ATAC-seq data to identify cell-type-specific MASLD-associated regulatory peaks not captured by liver eQTLs and link them to candidate genes using ABC, developed for HUJI’s Computational Genomics course (76553)

scRNA-seq cell type classification benchmark showing that random cell-level splits inflate performance due to donor-level leakage

Homepage of Dr Stephen P. Moss, Computational Scientist

CGG toolkit version 1.0.1

Independent project I undertook to perform a full ChIP-Seq analysis of the transcription factor Nanog in Zebrafish embryos.

Computational Genomics with R

Project for the course Computational Genomics

This repo includes assignments of the course Computational genomics and proteomics taken in 2022 Fall @ CUHKSZ.

Este repositório documenta a pesquisa computacional na interseção entre Biofísica da Informação e Engenharia Genética. Nosso objetivo é validar a hipótese de que o DNA se comporta como um substrato de armazenamento de dados governado por princípios de termodinâmica da informação.

Computational genomics and forensic AI framework for degraded DNA identification, ancestry inference, and probabilistic genomic analysis using 1000 Genomes data.

Bioinformatics wealth of African countries

Internship project: Decomposition of somatic mutation profiles into mutational signatures