Modular Agent Based Evolution Framework
Python phylogeny tracker for in silico evolution experiments
Dyadic Framework
Artificial life in the browser: organisms evolve genomes, brains, memory and communication. Nothing about their behaviour is scripted.
Digital evolution model dedicated to bacterial in silico experimental evolution.
Computational model of laboratory directed evolution + experiments.
We use digital evolution to investigate the evolutionary consequences of phenotypic plasticity.
CodonTrace Genesis — deterministic research software for digital evolution, causal mechanism auditing, replayable ALife experiments, and evidence-gated AI/evolution studies.
Source for our manuscript, "Adaptive phenotypic plasticity stabilizes evolution in fluctuating environments"
A collection of work investigating the potentiation of associative learning in digital organisms
A Red Queen-style symmetric melee evolution sandbox: grid-world agent-based simulation that faithfully records full time-series data for others to learn selection operators from; a pure data recorder with no built-in learner and no hand-written fitness
Faithful implementations of 15 classic artificial-life systems + a five-family battery of emergent-complexity measures.
A digital evolution system and library
Digital evolution research on the substrate constraints that determine what selection can express
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