#
mosdepth
Here are 3 public repositories matching this topic...
Germline variant calling pipeline (bwa, samtools, bcftools, SnpEff) for targeted cancer panel data from the public SEQC2 reference sample, with an R/Quarto report.
bash bioinformatics r reproducible-research ngs cancer-genomics variant-calling samtools bwa bcftools snpeff targeted-sequencing quarto germline-variants fastp gene-panel mosdepth seqc2
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Updated
Oct 16, 2026 - R
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