[bencap]

Summary

The editor's organize-imports on save applies Ruff's import-sorting rules, but bin/check didn't select them, so saving a file reordered its imports and those reorders showed up in unrelated diffs. This adds "I" to [tool.ruff.lint] select so the CLI and CI enforce the same order the editor applies.

• Rule: select = ["E4", "E7", "E9", "F", "I"] in pyproject.toml.
• Fixes: Ruff's --fix output only, in 87 files (three are stubs in mypy_stubs/): reorders within import groups and dropped blank lines after imports. No hand edits.

For open branches: after rebasing onto this, run poetry run ruff check --fix to sort any imports the branch added.

Tests

No new tests; it changes no behavior. Ran bin/check (clean) and the PR suite, bin/t tests/ -n 6 -m "not network and not slow": 5,433 passed, 22 skipped. The full suite was run because reordering imports can change module side effects, such as model registration.

Checklist

• Targets the open patch branch if this is a small, non-breaking change, or the cycle's release-<year>.<n>.0
  branch otherwise; never main
• API schema change? A matching mavedb-ui PR regenerates src/schema/openapi.d.ts (no schema change)
• Docs and instruction files touched by this change are updated (none affected)

[coveralls]

Coverage Report for CI Build 39865049119

Coverage decreased (-0.06%) to 90.341%

Details

• Coverage decreased (-0.06%) from the base build.
• Patch coverage: 35 of 35 lines across 23 files are fully covered (100%).
• 12 coverage regressions across 3 files.

Uncovered Changes

No uncovered changes found.

Coverage Regressions

12 previously-covered lines in 3 files lost coverage.

File	Lines Losing Coverage	Coverage
src/mavedb/lib/clinvar/utils.py	6	90.91%
src/mavedb/worker/jobs/external_services/clinvar.py	4	96.97%
src/mavedb/lib/mondo_ols.py	2	96.92%

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Coverage Stats

Relevant Lines:	19184
Covered Lines:	17331
Line Coverage:	90.34%
Coverage Strength:	0.9 hits per line

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💛 - Coveralls