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chore(schema): regenerate API types for identifiers stored on owner rows #755

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10ac488
chore(schema): regenerate API types
bencap Oct 23, 2026
8346104
fix: treat DOIs that differ only in case as duplicates
bencap Oct 23, 2026
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3 changes: 2 additions & 1 deletion src/lib/form-helpers.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -124,7 +124,8 @@ export function addDoiIdentifier(
if (!text) return null

const doi = normalizeDoi(text)
if (existing.find((item) => item.identifier === doi)) {
// DOIs are case-insensitive, and the api stores them upper-cased.
if (existing.find((item) => item.identifier.toUpperCase() === doi.toUpperCase())) {
toast.add({severity: 'warn', summary: `DOI "${doi}" is already associated with ${entityLabel}`, life: 3000})
return null
}
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55 changes: 29 additions & 26 deletions src/schema/openapi.d.ts
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Original file line number Diff line number Diff line change
Expand Up @@ -191,7 +191,7 @@ export interface paths {
"/api/v1/doi-identifiers/search": {
/**
* Search DOI identifiers
* @description Search DOI identifiers based on the provided text.
* @description Search the DOI identifiers cited by records you can read.
*/
post: operations["search_doi_identifiers_api_v1_doi_identifiers_search_post"];
};
Expand Down Expand Up @@ -516,7 +516,7 @@ export interface paths {
"/api/v1/raw-read-identifiers/search": {
/**
* Search Raw Read identifiers
* @description Search Raw Read identifiers.
* @description Search the Raw Read identifiers cited by records you can read.
*/
post: operations["search_raw_read_identifiers_api_v1_raw_read_identifiers_search_post"];
};
Expand Down Expand Up @@ -1227,15 +1227,15 @@ export interface paths {
"/api/v1/statistics/record/{record}/raw-read-identifiers": {
/**
* Get raw read identifier statistics for a record
* @description Returns a dictionary of counts for the distinct values of the `identifier` field (member of the `raw_read_identifiers` table).
* @description Returns a dictionary of counts for each distinct raw read identifier.
* Don't include any raw read identifiers from unpublished experiments.
*/
get: operations["experiment_raw_read_identifier_statistics_api_v1_statistics_record__record__raw_read_identifiers_get"];
};
"/api/v1/statistics/record/{record}/doi-identifiers": {
/**
* Get DOI identifier statistics for a record
* @description Returns a dictionary of counts for the distinct values of the `identifier` field (member of the `doi_identifiers` table).
* @description Returns a dictionary of counts for each distinct DOI identifier.
* Don't include any DOI identifiers from unpublished experiments.
*/
get: operations["experiment_doi_identifiers_statistics_api_v1_statistics_record__record__doi_identifiers_get"];
Expand Down Expand Up @@ -1334,23 +1334,23 @@ export interface paths {
"/api/v1/statistics/target/gene/ensembl-identifier": {
/**
* Get target gene statistics for Ensembl identifiers
* @description Returns a dictionary of counts for the distinct values of the `identifier` field (member of the `ensembl_identifiers` table).
* @description Returns a dictionary of counts for each distinct Ensembl identifier of a target gene.
* Don't include any NULL field values. Don't include any targets from unpublished score sets.
*/
get: operations["target_genes_ensembl_identifier_counts_api_v1_statistics_target_gene_ensembl_identifier_get"];
};
"/api/v1/statistics/target/gene/refseq-identifier": {
/**
* Get target gene statistics for RefSeq identifiers
* @description Returns a dictionary of counts for the distinct values of the `identifier` field (member of the `refseq_identifiers` table).
* @description Returns a dictionary of counts for each distinct RefSeq identifier of a target gene.
* Don't include any NULL field values. Don't include any targets from unpublished score sets.
*/
get: operations["target_genes_refseq_identifier_counts_api_v1_statistics_target_gene_refseq_identifier_get"];
};
"/api/v1/statistics/target/gene/uniprot-identifier": {
/**
* Get target gene statistics for UniProt identifiers
* @description Returns a dictionary of counts for the distinct values of the `identifier` field (member of the `uniprot_identifiers` table).
* @description Returns a dictionary of counts for each distinct UniProt identifier of a target gene.
* Don't include any NULL field values. Don't include any targets from unpublished score sets.
*/
get: operations["target_genes_uniprot_identifier_counts_api_v1_statistics_target_gene_uniprot_identifier_get"];
Expand Down Expand Up @@ -1384,7 +1384,7 @@ export interface paths {
"/api/v1/target-gene-identifiers/search": {
/**
* Search target gene identifiers
* @description Search target gene identifiers.
* @description Search the target gene identifiers of score sets you can read.
*/
post: operations["search_target_gene_identifiers_api_v1_target_gene_identifiers_search_post"];
};
Expand Down Expand Up @@ -3256,8 +3256,6 @@ export interface components {
DoiIdentifier: {
/** Identifier */
identifier: string;
/** Id */
id: number;
/** Recordtype */
recordType?: string;
/** Url */
Expand Down Expand Up @@ -3733,8 +3731,6 @@ export interface components {
dbVersion?: string | null;
/** Url */
url?: string | null;
/** Referencehtml */
referenceHtml?: string | null;
};
/** ExternalGeneIdentifierCreate */
ExternalGeneIdentifierCreate: {
Expand Down Expand Up @@ -4766,8 +4762,6 @@ export interface components {
RawReadIdentifier: {
/** Identifier */
identifier: string;
/** Id */
id: number;
/** Recordtype */
recordType?: string;
/** Url */
Expand Down Expand Up @@ -5118,8 +5112,6 @@ export interface components {
SavedDoiIdentifier: {
/** Identifier */
identifier: string;
/** Id */
id: number;
/** Recordtype */
recordType?: string;
/** Url */
Expand Down Expand Up @@ -5294,8 +5286,6 @@ export interface components {
SavedRawReadIdentifier: {
/** Identifier */
identifier: string;
/** Id */
id: number;
/** Recordtype */
recordType?: string;
/** Url */
Expand Down Expand Up @@ -8214,9 +8204,14 @@ export interface operations {
};
/**
* Search DOI identifiers
* @description Search DOI identifiers based on the provided text.
* @description Search the DOI identifiers cited by records you can read.
*/
search_doi_identifiers_api_v1_doi_identifiers_search_post: {
parameters: {
header?: {
"x-active-roles"?: string | null;
};
};
requestBody: {
content: {
"application/json": components["schemas"]["TextSearch"];
Expand Down Expand Up @@ -9886,9 +9881,14 @@ export interface operations {
};
/**
* Search Raw Read identifiers
* @description Search Raw Read identifiers.
* @description Search the Raw Read identifiers cited by records you can read.
*/
search_raw_read_identifiers_api_v1_raw_read_identifiers_search_post: {
parameters: {
header?: {
"x-active-roles"?: string | null;
};
};
requestBody: {
content: {
"application/json": components["schemas"]["TextSearch"];
Expand Down Expand Up @@ -12351,7 +12351,7 @@ export interface operations {
};
/**
* Get raw read identifier statistics for a record
* @description Returns a dictionary of counts for the distinct values of the `identifier` field (member of the `raw_read_identifiers` table).
* @description Returns a dictionary of counts for each distinct raw read identifier.
* Don't include any raw read identifiers from unpublished experiments.
*/
experiment_raw_read_identifier_statistics_api_v1_statistics_record__record__raw_read_identifiers_get: {
Expand Down Expand Up @@ -12387,7 +12387,7 @@ export interface operations {
};
/**
* Get DOI identifier statistics for a record
* @description Returns a dictionary of counts for the distinct values of the `identifier` field (member of the `doi_identifiers` table).
* @description Returns a dictionary of counts for each distinct DOI identifier.
* Don't include any DOI identifiers from unpublished experiments.
*/
experiment_doi_identifiers_statistics_api_v1_statistics_record__record__doi_identifiers_get: {
Expand Down Expand Up @@ -12726,7 +12726,7 @@ export interface operations {
};
/**
* Get target gene statistics for Ensembl identifiers
* @description Returns a dictionary of counts for the distinct values of the `identifier` field (member of the `ensembl_identifiers` table).
* @description Returns a dictionary of counts for each distinct Ensembl identifier of a target gene.
* Don't include any NULL field values. Don't include any targets from unpublished score sets.
*/
target_genes_ensembl_identifier_counts_api_v1_statistics_target_gene_ensembl_identifier_get: {
Expand All @@ -12751,7 +12751,7 @@ export interface operations {
};
/**
* Get target gene statistics for RefSeq identifiers
* @description Returns a dictionary of counts for the distinct values of the `identifier` field (member of the `refseq_identifiers` table).
* @description Returns a dictionary of counts for each distinct RefSeq identifier of a target gene.
* Don't include any NULL field values. Don't include any targets from unpublished score sets.
*/
target_genes_refseq_identifier_counts_api_v1_statistics_target_gene_refseq_identifier_get: {
Expand All @@ -12776,7 +12776,7 @@ export interface operations {
};
/**
* Get target gene statistics for UniProt identifiers
* @description Returns a dictionary of counts for the distinct values of the `identifier` field (member of the `uniprot_identifiers` table).
* @description Returns a dictionary of counts for each distinct UniProt identifier of a target gene.
* Don't include any NULL field values. Don't include any targets from unpublished score sets.
*/
target_genes_uniprot_identifier_counts_api_v1_statistics_target_gene_uniprot_identifier_get: {
Expand Down Expand Up @@ -12901,13 +12901,16 @@ export interface operations {
};
/**
* Search target gene identifiers
* @description Search target gene identifiers.
* @description Search the target gene identifiers of score sets you can read.
*/
search_target_gene_identifiers_api_v1_target_gene_identifiers_search_post: {
parameters: {
query: {
db_name: string;
};
header?: {
"x-active-roles"?: string | null;
};
};
requestBody: {
content: {
Expand Down
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