tools_downsample.cwl

Documentation for downsample.cwl

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Overview

downsample unaligned BAM

Docker Requirement

broadinstitute/gatk:4.1.4.1

Inputs

Name	Label	Description	Type	Secondary Files
sam			File
probability			float
reference			['string', 'File']	['.fai', '^.dict']
random_seed			int?
strategy			['null', {'type': 'enum', 'symbols': ['HighAccuracy', 'ConstantMemory', 'Chained']}]

Outputs

Name	Label	Description	Type	Secondary Files
downsampled_sam			File	['.md5', '^.bai']