Scripts to build and analyze the Big Fantastic Virus Database (BFVD), a repository of predicted structures of viral proteins.
| Version | Content | Publication | Code |
|---|---|---|---|
| BFVD v3 | UniProt 2025_03 viral proteins (≤2,000 residues), 5,776,417 structures | to be added | script_v3/ |
| BFVD v1 / v2 | UniRef30 2023_02 viral cluster representatives, 351,242 structures | Nucleic Acids Research, doi:10.1093/nar/gkae1119 | script_v1/ |
All code is in script_v3/.
| Folder | Contents |
|---|---|
script_v3/prediction/ |
Data production code for base MSAs, templates, Logan50 search, ColabFold prediction |
script_v3/benchmark/ |
benchmark of structure prediction condition |
script_v3/analysis/ |
data analysis scripts |
script_v3/common/ |
site configuration (env.example.sh) |
cd script_v3
conda env create -f environment.yml && conda activate bfvd-analysis
cp common/env.example.sh common/env.sh # then set paths and databases3d-beacons-bfvd/: metadata export of BFVD for the 3D-Beacons network.
- Webserver: Explore BFVD with UniProt accessions and structures.
- Data availability: Structures of BFVD and relevant metadata.